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  5. Sobic.004G070200.1

Sobic.004G070200.1


Description : exoribonuclease *(RNase J)


Gene families : OG_42_0003719 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003719_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G070200.1
Cluster HCAA Clusters: Cluster_1

Target Alias Description ECC score Gene Family Method Actions
At5g63420 No alias Ribonuclease J [Source:UniProtKB/Swiss-Prot;Acc:Q84W56] 0.03 Orthogroups_2024-Update
Bradi3g45230 No alias RNA-metabolising metallo-beta-lactamase family protein 0.03 Orthogroups_2024-Update
GRMZM2G000964 No alias RNA-metabolising metallo-beta-lactamase family protein 0.03 Orthogroups_2024-Update
GRMZM2G134439 No alias RNA-metabolising metallo-beta-lactamase family protein 0.05 Orthogroups_2024-Update
GRMZM2G326783 No alias RNA-metabolising metallo-beta-lactamase family protein 0.05 Orthogroups_2024-Update
Glyma.06G171400 No alias RNA-metabolising metallo-beta-lactamase family protein 0.02 Orthogroups_2024-Update
MA_10437259g0030 No alias (at5g63420 : 187.0) embryo defective 2746 (emb2746);... 0.03 Orthogroups_2024-Update
Mp3g10830.1 No alias exo-/endoribonuclease (RNase J) 0.03 Orthogroups_2024-Update
Potri.012G095800 No alias RNA-metabolising metallo-beta-lactamase family protein 0.05 Orthogroups_2024-Update
Potri.015G093600 No alias RNA-metabolising metallo-beta-lactamase family protein 0.04 Orthogroups_2024-Update
Pp1s192_99V6 No alias MLE2.5; hydrolase family [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.1G185600.1 No alias exoribonuclease *(RNase J) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0004045 aminoacyl-tRNA hydrolase activity IEP Predicted GO
MF GO:0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004519 endonuclease activity IEP Predicted GO
MF GO:0004525 ribonuclease III activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005524 ATP binding IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
MF GO:0008144 drug binding IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Predicted GO
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 109 245
IPR011108 RMMBL 435 480
No external refs found!