Sobic.004G073300.1

Description : subfamily ABCB transporter

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G073300.1
Cluster	HCAA Clusters: Cluster_157

Target	Alias	Description	ECC score	Gene Family Method
74892	No alias	P-glycoprotein 21	0.02	Orthogroups_2024-Update
92485	No alias	ATP binding cassette subfamily B19	0.01	Orthogroups_2024-Update
Bradi2g47330	No alias	P-glycoprotein 11	0.02	Orthogroups_2024-Update
Bradi2g47400	No alias	ATP binding cassette subfamily B4	0.06	Orthogroups_2024-Update
GRMZM2G085236	No alias	ATP binding cassette subfamily B19	0.02	Orthogroups_2024-Update
LOC_Os01g34970	No alias	MDR-like ABC transporter, putative, expressed	0.02	Orthogroups_2024-Update
MA_635039g0010	No alias	(at1g02520 : 559.0) P-glycoprotein 11 (PGP11); FUNCTIONS...	0.02	Orthogroups_2024-Update
Mp1g26440.1	No alias	subfamily ABCB transporter	0.01	Orthogroups_2024-Update
Mp2g11920.1	No alias	subfamily ABCB transporter	0.01	Orthogroups_2024-Update
PSME_00027754-RA	No alias	(at2g47000 : 1521.0) Multidrug resistance ...	0.02	Orthogroups_2024-Update
Potri.001G417600	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
Potri.006G123900	No alias	ATP binding cassette subfamily B1	0.02	Orthogroups_2024-Update
Potri.017G085000	No alias	ABC transporter family protein	0.02	Orthogroups_2024-Update
Sopen02g032160	No alias	ABC transporter transmembrane region	0.03	Orthogroups_2024-Update
Sopen09g003060	No alias	ABC transporter transmembrane region	0.06	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	16Dec
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0015291	secondary active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0015297	antiporter activity	IEP	Predicted GO
MF	GO:0022804	active transmembrane transporter activity	IEP	Predicted GO
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	4	36
IPR003439	ABC_transporter-like	509	630
IPR011527	ABC1_TM_dom	170	437

External Links

No external refs found!