Sobic.004G073500.2

Description : subfamily ABCB transporter

Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G073500.2
Cluster	HCAA Clusters: Cluster_223

Target	Alias	Description	ECC score	Gene Family Method
Bradi3g17020	No alias	ATP binding cassette subfamily B1	0.03	Orthogroups_2024-Update
Brara.E00621.1	No alias	subfamily ABCB transporter	0.02	Orthogroups_2024-Update
Glyma.13G118500	No alias	P-glycoprotein 11	0.03	Orthogroups_2024-Update
HORVU2Hr1G080200.1	No alias	auxin efflux transporter *(ABCB19) & subfamily ABCB transporter	0.03	Orthogroups_2024-Update
MA_1824g0020	No alias	(at3g28345 : 646.0) ABC transporter family protein;...	0.04	Orthogroups_2024-Update
PSME_00023028-RA	No alias	(at3g28345 : 1461.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
PSME_00037475-RA	No alias	(at3g28345 : 1337.0) ABC transporter family protein;...	0.03	Orthogroups_2024-Update
Pp1s391_45V6	No alias	multidrug pheromone mdr abc transporter family	0.02	Orthogroups_2024-Update
Seita.5G283000.1	No alias	subfamily ABCB transporter	0.04	Orthogroups_2024-Update
Solyc07g064120	No alias	ABC transporter B family protein (AHRD V3.3 *** G7JF16_MEDTR)	0.03	Orthogroups_2024-Update
Sopen09g003060	No alias	ABC transporter transmembrane region	0.05	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	16Dec
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR011527	ABC1_TM_dom	684	953
IPR011527	ABC1_TM_dom	54	316
IPR003439	ABC_transporter-like	1024	1172
IPR003439	ABC_transporter-like	396	543

External Links

No external refs found!