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  5. Sobic.004G073600.1

Sobic.004G073600.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G073600.1
Cluster HCAA Clusters: Cluster_167

Target Alias Description ECC score Gene Family Method Actions
99885 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
Bradi2g17710 No alias P-glycoprotein 11 0.05 Orthogroups_2024-Update
Glyma.01G016500 No alias P-glycoprotein 2 0.03 Orthogroups_2024-Update
Glyma.13G063700 No alias ATP binding cassette subfamily B19 0.03 Orthogroups_2024-Update
Glyma.16G078100 No alias ABC transporter family protein 0.02 Orthogroups_2024-Update
Glyma.19G184300 No alias ATP binding cassette subfamily B1 0.02 Orthogroups_2024-Update
MA_62683g0010 No alias (at2g36910 : 1072.0) Belongs to the family of... 0.03 Orthogroups_2024-Update
PSME_00001910-RA No alias (at3g28345 : 1399.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00033760-RA No alias (at2g47000 : 911.0) Multidrug resistance P-glycoprotein... 0.03 Orthogroups_2024-Update
PSME_00036222-RA No alias (at3g28345 : 1018.0) ABC transporter family protein;... 0.04 Orthogroups_2024-Update
PSME_00037475-RA No alias (at3g28345 : 1337.0) ABC transporter family protein;... 0.03 Orthogroups_2024-Update
PSME_00043262-RA No alias (at3g28345 : 1088.0) ABC transporter family protein;... 0.04 Orthogroups_2024-Update
Potri.010G003000 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Predicted GO
BP GO:0005984 disaccharide metabolic process IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0006418 tRNA aminoacylation for protein translation IEP Predicted GO
BP GO:0009311 oligosaccharide metabolic process IEP Predicted GO
MF GO:0016157 sucrose synthase activity IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Predicted GO
MF GO:0035251 UDP-glucosyltransferase activity IEP Predicted GO
BP GO:0043038 amino acid activation IEP Predicted GO
BP GO:0043039 tRNA aminoacylation IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 374 520
IPR003439 ABC_transporter-like 1010 1158
IPR011527 ABC1_TM_dom 670 939
IPR011527 ABC1_TM_dom 30 302
No external refs found!