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  5. Sobic.004G082700.1

Sobic.004G082700.1


Description : component *(mS81) of small mitoribosomal-subunit proteome


Gene families : OG_42_0004307 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004307_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G082700.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At3g48250 No alias Pentatricopeptide repeat-containing protein At3g48250,... 0.03 Orthogroups_2024-Update
At5g15980 No alias Pentatricopeptide repeat-containing protein At5g15980,... 0.05 Orthogroups_2024-Update
Bradi3g07350 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Orthogroups_2024-Update
Brara.F02162.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.05 Orthogroups_2024-Update
Brara.J01919.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.06 Orthogroups_2024-Update
Glyma.08G255500 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G278400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Orthogroups_2024-Update
LOC_Os01g73950 No alias PPR repeat containing protein, expressed 0.02 Orthogroups_2024-Update
Potri.015G084800 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.09 Orthogroups_2024-Update
Seita.1G046200.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.17 Orthogroups_2024-Update
Seita.5G467400.1 No alias component *(mS81) of small mitoribosomal-subunit proteome 0.14 Orthogroups_2024-Update
Solyc02g089560 No alias Pentatricopeptide repeat (PPR) superfamily protein,... 0.05 Orthogroups_2024-Update
Sopen02g034290 No alias PPR repeat 0.09 Orthogroups_2024-Update
Sopen03g031280 No alias PPR repeat family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 237 266
IPR002885 Pentatricopeptide_repeat 414 441
IPR002885 Pentatricopeptide_repeat 488 516
No external refs found!