At3g54560

Description : Histone H2A [Source:UniProtKB/TrEMBL;Acc:A0A178V944]

Gene families : OG_42_0000970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000970_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g54560
Cluster	HCCA clusters: Cluster_155

Target	Alias	Description	ECC score	Gene Family Method
Brara.D00458.1	No alias	histone *(H2A)	0.03	Orthogroups_2024-Update
Brara.I03717.1	No alias	histone *(H2A)	0.04	Orthogroups_2024-Update
Cre13.g567700	No alias	histone H2A protein 9	0.03	Orthogroups_2024-Update
Glyma.02G143200	No alias	histone H2A 11	0.07	Orthogroups_2024-Update
Glyma.03G158100	No alias	histone H2A 11	0.04	Orthogroups_2024-Update
Glyma.10G031200	No alias	histone H2A 11	0.03	Orthogroups_2024-Update
LOC_Os03g53190	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.03	Orthogroups_2024-Update
LOC_Os10g28230	No alias	Core histone H2A/H2B/H3/H4 domain containing protein,...	0.02	Orthogroups_2024-Update
Pp1s376_22V6	No alias	histone 2	0.02	Orthogroups_2024-Update
Seita.9G531300.1	No alias	histone *(H2A)	0.03	Orthogroups_2024-Update
Solyc06g084090	No alias	Histone H2A (AHRD V3.3 *** K4CAR4_SOLLC)	0.06	Orthogroups_2024-Update
Sopen06g035480	No alias	Core histone H2A/H2B/H3/H4	0.04	Orthogroups_2024-Update
evm.model.contig_2022.11	No alias	(q84mp7\|h2av3_orysa : 175.0) Probable histone H2A...	0.03	Orthogroups_2024-Update
evm.model.tig00021108.27	No alias	(q8h7y8\|h2av1_orysa : 197.0) Probable histone H2A...	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	InterProScan predictions
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044427	chromosomal part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000808	origin recognition complex	IEP	Predicted GO
MF	GO:0003678	DNA helicase activity	IEP	Predicted GO
MF	GO:0003735	structural constituent of ribosome	IEP	Predicted GO
MF	GO:0004514	nicotinate-nucleotide diphosphorylase (carboxylating) activity	IEP	Predicted GO
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Predicted GO
MF	GO:0005198	structural molecule activity	IEP	Predicted GO
CC	GO:0005634	nucleus	IEP	Predicted GO
CC	GO:0005739	mitochondrion	IEP	Predicted GO
CC	GO:0005840	ribosome	IEP	Predicted GO
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Predicted GO
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Predicted GO
BP	GO:0006260	DNA replication	IEP	Predicted GO
BP	GO:0006412	translation	IEP	Predicted GO
BP	GO:0006518	peptide metabolic process	IEP	Predicted GO
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Predicted GO
BP	GO:0007062	sister chromatid cohesion	IEP	Predicted GO
BP	GO:0007064	mitotic sister chromatid cohesion	IEP	Predicted GO
BP	GO:0009058	biosynthetic process	IEP	Predicted GO
BP	GO:0009059	macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0009435	NAD biosynthetic process	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
MF	GO:0017048	Rho GTPase binding	IEP	Predicted GO
BP	GO:0019674	NAD metabolic process	IEP	Predicted GO
BP	GO:0022402	cell cycle process	IEP	Predicted GO
CC	GO:0030127	COPII vesicle coat	IEP	Predicted GO
CC	GO:0031390	Ctf18 RFC-like complex	IEP	Predicted GO
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Predicted GO
BP	GO:0034645	cellular macromolecule biosynthetic process	IEP	Predicted GO
BP	GO:0043043	peptide biosynthetic process	IEP	Predicted GO
CC	GO:0043226	organelle	IEP	Predicted GO
CC	GO:0043227	membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043228	non-membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043229	intracellular organelle	IEP	Predicted GO
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Predicted GO
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Predicted GO
BP	GO:0043603	cellular amide metabolic process	IEP	Predicted GO
BP	GO:0043604	amide biosynthetic process	IEP	Predicted GO
BP	GO:0044249	cellular biosynthetic process	IEP	Predicted GO
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	Predicted GO
CC	GO:0044444	cytoplasmic part	IEP	Predicted GO
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	Predicted GO
BP	GO:1901576	organic substance biosynthetic process	IEP	Predicted GO
BP	GO:1903047	mitotic cell cycle process	IEP	Predicted GO
CC	GO:1990904	ribonucleoprotein complex	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR007125	Histone_H2A/H2B/H3	13	105
IPR032454	Histone_H2A_C	106	135

External Links

No external refs found!

At3g54560

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation