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  5. Sobic.004G086600.1

Sobic.004G086600.1


Description : regulatory component *(RPT6) of 26S proteasome


Gene families : OG_42_0003229 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0003229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G086600.1
Cluster HCAA Clusters: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
A4A49_08439 No alias 26s protease regulatory subunit 8-like a 0.02 Orthogroups_2024-Update
Bradi1g36830 No alias regulatory particle triple-A ATPase 6A 0.05 Orthogroups_2024-Update
Bradi3g07700 No alias regulatory particle triple-A ATPase 6A 0.03 Orthogroups_2024-Update
Cre04.g216600 No alias regulatory particle triple-A ATPase 6A 0.08 Orthogroups_2024-Update
Kfl00020_0400 kfl00020_0400_v1.1 (at5g19990 : 667.0) 26S proteasome AAA-ATPase subunit;... 0.03 Orthogroups_2024-Update
Mp1g04290.1 No alias regulatory component RPT6 of 26S proteasome 0.02 Orthogroups_2024-Update
Pp1s245_17V6 No alias 26s proteasome aaa-atpase subunit rpt6a 0.02 Orthogroups_2024-Update
Seita.1G042600.1 No alias regulatory component *(RPT6) of 26S proteasome 0.07 Orthogroups_2024-Update
Sopen05g015680 No alias ATPase family associated with various cellular activities (AAA) 0.03 Orthogroups_2024-Update
evm.model.tig00000792.28 No alias (at5g19990 : 630.0) 26S proteasome AAA-ATPase subunit;... 0.07 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
MF GO:0016887 ATPase activity IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0005985 sucrose metabolic process IEP Predicted GO
BP GO:0005986 sucrose biosynthetic process IEP Predicted GO
BP GO:0006099 tricarboxylic acid cycle IEP Predicted GO
BP GO:0006101 citrate metabolic process IEP Predicted GO
BP GO:0006497 protein lipidation IEP Predicted GO
BP GO:0006505 GPI anchor metabolic process IEP Predicted GO
BP GO:0006506 GPI anchor biosynthetic process IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006661 phosphatidylinositol biosynthetic process IEP Predicted GO
BP GO:0006886 intracellular protein transport IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0016999 antibiotic metabolic process IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
MF GO:0019203 carbohydrate phosphatase activity IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
CC GO:0030126 COPI vesicle coat IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044431 Golgi apparatus part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046474 glycerophospholipid biosynthetic process IEP Predicted GO
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Predicted GO
MF GO:0050307 sucrose-phosphate phosphatase activity IEP Predicted GO
MF GO:0050308 sugar-phosphatase activity IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
MF GO:0070403 NAD+ binding IEP Predicted GO
BP GO:0071569 protein ufmylation IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR032501 Prot_ATP_ID_OB 88 143
IPR003959 ATPase_AAA_core 201 334
No external refs found!