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  5. Sobic.004G103700.1

Sobic.004G103700.1


Description : component *(uL16) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001900 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001900_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G103700.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
437527 No alias Ribosomal protein L16p/L10e family protein 0.06 Orthogroups_2024-Update
A4A49_56503 No alias 60s ribosomal protein l10 0.05 Orthogroups_2024-Update
A4A49_60639 No alias 60s ribosomal protein l10 0.11 Orthogroups_2024-Update
At1g26910 No alias 60S ribosomal protein L10-2... 0.03 Orthogroups_2024-Update
At1g66580 No alias 60S ribosomal protein L10-3... 0.06 Orthogroups_2024-Update
Bradi2g34440 No alias Ribosomal protein L16p/L10e family protein 0.1 Orthogroups_2024-Update
Brara.B01878.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Brara.F00957.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
Brara.G02465.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.G02907.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.15 Orthogroups_2024-Update
Brara.H02579.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.13 Orthogroups_2024-Update
Cre09.g388200 No alias senescence associated gene 24 0.09 Orthogroups_2024-Update
GRMZM2G087233 No alias senescence associated gene 24 0.03 Orthogroups_2024-Update
Glyma.02G220000 No alias Ribosomal protein L16p/L10e family protein 0.1 Orthogroups_2024-Update
Glyma.06G140900 No alias Ribosomal protein L16p/L10e family protein 0.04 Orthogroups_2024-Update
Glyma.14G187800 No alias Ribosomal protein L16p/L10e family protein 0.07 Orthogroups_2024-Update
HORVU1Hr1G024710.2 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.14 Orthogroups_2024-Update
MA_17326g0010 No alias (p93847|rl10_solme : 399.0) 60S ribosomal protein L10... 0.04 Orthogroups_2024-Update
Mp4g23990.1 No alias component RPL10 of LSU proteome component 0.09 Orthogroups_2024-Update
PSME_00015731-RA No alias (p93847|rl10_solme : 394.0) 60S ribosomal protein L10... 0.1 Orthogroups_2024-Update
PSME_00042423-RA No alias (p93847|rl10_solme : 402.0) 60S ribosomal protein L10... 0.05 Orthogroups_2024-Update
Potri.013G159600 No alias Ribosomal protein L16p/L10e family protein 0.04 Orthogroups_2024-Update
Pp1s22_94V6 No alias 60s ribosomal protein l10-3 0.19 Orthogroups_2024-Update
Pp1s2_197V6 No alias 60s ribosomal protein l10-3 0.07 Orthogroups_2024-Update
Pp1s347_24V6 No alias 60s ribosomal protein l10-3 0.18 Orthogroups_2024-Update
Pp1s447_11V6 No alias 60s ribosomal protein l10-3 0.02 Orthogroups_2024-Update
Seita.1G023800.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.11 Orthogroups_2024-Update
Seita.3G099700.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.03 Orthogroups_2024-Update
Seita.7G273300.1 No alias component *(uL16) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Solyc06g007520 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.19 Orthogroups_2024-Update
Solyc06g082650 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.17 Orthogroups_2024-Update
Solyc06g082670 No alias 60S ribosomal protein L10 (AHRD V3.3 *** RL10_SOLME) 0.21 Orthogroups_2024-Update
Sopen06g002430 No alias Ribosomal protein L16p/L10e 0.17 Orthogroups_2024-Update
Sopen06g034040 No alias Ribosomal protein L16p/L10e 0.13 Orthogroups_2024-Update
Sopen06g034060 No alias Ribosomal protein L16p/L10e 0.16 Orthogroups_2024-Update
evm.model.tig00001424.5 No alias (p45636|rl102_orysa : 214.0) 60S ribosomal protein L10-2... 0.05 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA 16Dec
CC GO:0005840 ribosome IEA 16Dec
BP GO:0006412 translation IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005783 endoplasmic reticulum IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017076 purine nucleotide binding IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
MF GO:0030515 snoRNA binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032553 ribonucleotide binding IEP Predicted GO
MF GO:0032555 purine ribonucleotide binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
MF GO:0097367 carbohydrate derivative binding IEP Predicted GO
MF GO:1901265 nucleoside phosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR016180 Ribosomal_L10e/L16 12 166
No external refs found!