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  5. Sobic.004G104100.1

Sobic.004G104100.1


Description : component *(uL5) of large ribosomal-subunit (LSU) proteome


Gene families : OG_42_0001107 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001107_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G104100.1
Cluster HCAA Clusters: Cluster_124

Target Alias Description ECC score Gene Family Method Actions
444767 No alias ribosomal protein L16B 0.02 Orthogroups_2024-Update
A4A49_37402 No alias 60s ribosomal protein l11-2 0.14 Orthogroups_2024-Update
A4A49_58122 No alias 60s ribosomal protein l11-2 0.14 Orthogroups_2024-Update
A4A49_61288 No alias 60s ribosomal protein l11-2 0.09 Orthogroups_2024-Update
At3g58700 No alias 60S ribosomal protein L11-2... 0.08 Orthogroups_2024-Update
At4g18730 No alias 60S ribosomal protein L11-2... 0.05 Orthogroups_2024-Update
Bradi2g06467 No alias ribosomal protein large subunit 16A 0.2 Orthogroups_2024-Update
Bradi2g32640 No alias ribosomal protein large subunit 16A 0.24 Orthogroups_2024-Update
Bradi3g09030 No alias ribosomal protein large subunit 16A 0.12 Orthogroups_2024-Update
Brara.A00981.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.B02847.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.07 Orthogroups_2024-Update
Brara.D00226.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.08 Orthogroups_2024-Update
Brara.F03663.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.16 Orthogroups_2024-Update
Brara.I01908.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.12 Orthogroups_2024-Update
Brara.I04045.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.06 Orthogroups_2024-Update
Brara.K00428.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.2 Orthogroups_2024-Update
Cre01.g027000 No alias ribosomal protein large subunit 16A 0.14 Orthogroups_2024-Update
GRMZM2G001816 No alias Ribosomal L5P family protein 0.06 Orthogroups_2024-Update
GRMZM2G014444 No alias Ribosomal L5P family protein 0.04 Orthogroups_2024-Update
Glyma.04G111500 No alias Ribosomal L5P family protein 0.03 Orthogroups_2024-Update
Glyma.06G272500 No alias Ribosomal L5P family protein 0.08 Orthogroups_2024-Update
Glyma.06G317400 No alias Ribosomal L5P family protein 0.06 Orthogroups_2024-Update
Glyma.06G323000 No alias Ribosomal L5P family protein 0.22 Orthogroups_2024-Update
Glyma.12G131700 No alias Ribosomal L5P family protein 0.09 Orthogroups_2024-Update
Glyma.15G227600 No alias Ribosomal L5P family protein 0.02 Orthogroups_2024-Update
HORVU1Hr1G028820.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.17 Orthogroups_2024-Update
HORVU3Hr1G026060.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.09 Orthogroups_2024-Update
Kfl00764_0020 kfl00764_0020_v1.... (p46287|rl11_medsa : 322.0) 60S ribosomal protein L11... 0.02 Orthogroups_2024-Update
LOC_Os01g10820 No alias ribosomal protein L5, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os06g35730 No alias ribosomal protein L5, putative, expressed 0.03 Orthogroups_2024-Update
MA_74060g0010 No alias (at5g45775 : 344.0) Ribosomal L5P family protein;... 0.08 Orthogroups_2024-Update
MA_86694g0010 No alias (at5g45775 : 283.0) Ribosomal L5P family protein;... 0.04 Orthogroups_2024-Update
Mp2g24740.1 No alias component RPL11 of LSU proteome component 0.17 Orthogroups_2024-Update
Mp6g18870.1 No alias component RPL11 of LSU proteome component 0.05 Orthogroups_2024-Update
PSME_00002051-RA No alias (at5g45775 : 331.0) Ribosomal L5P family protein;... 0.1 Orthogroups_2024-Update
Potri.006G181600 No alias Ribosomal L5P family protein 0.11 Orthogroups_2024-Update
Potri.011G068900 No alias Ribosomal L5P family protein 0.09 Orthogroups_2024-Update
Pp1s239_32V6 No alias 60s ribosomal protein 0.1 Orthogroups_2024-Update
Pp1s265_52V6 No alias 60s ribosomal protein 0.19 Orthogroups_2024-Update
Pp1s2_412V6 No alias 60s ribosomal protein 0.05 Orthogroups_2024-Update
Pp1s38_269V6 No alias 60s ribosomal protein 0.12 Orthogroups_2024-Update
Pp1s41_304V6 No alias 60s ribosomal protein 0.16 Orthogroups_2024-Update
Pp1s54_157V6 No alias 60s ribosomal protein 0.12 Orthogroups_2024-Update
Seita.5G144900.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.27 Orthogroups_2024-Update
Seita.7G232800.1 No alias component *(uL5) of large ribosomal-subunit (LSU) proteome 0.24 Orthogroups_2024-Update
Solyc02g086240 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.18 Orthogroups_2024-Update
Solyc07g055230 No alias homeodomain GLABROUS 7 (AHRD V3.3 --* AT5G52170.3) 0.14 Orthogroups_2024-Update
Solyc10g007980 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.21 Orthogroups_2024-Update
Solyc12g010930 No alias Ribosomal L5P family protein (AHRD V3.3 *** AT5G45775.2) 0.25 Orthogroups_2024-Update
Sopen02g030920 No alias ribosomal L5P family C-terminus 0.14 Orthogroups_2024-Update
Sopen07g026990 No alias ribosomal L5P family C-terminus 0.12 Orthogroups_2024-Update
Sopen10g003850 No alias ribosomal L5P family C-terminus 0.29 Orthogroups_2024-Update
Sopen12g006290 No alias ribosomal L5P family C-terminus 0.26 Orthogroups_2024-Update
evm.model.contig_4456.22 No alias (p46287|rl11_medsa : 230.0) 60S ribosomal protein L11... 0.32 Orthogroups_2024-Update
evm.model.tig00020610.38 No alias (at2g42740 : 221.0) encodes a cytosolic ribosomal... 0.12 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP Predicted GO
BP GO:0001510 RNA methylation IEP Predicted GO
MF GO:0003674 molecular_function IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003746 translation elongation factor activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006414 translational elongation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008649 rRNA methyltransferase activity IEP Predicted GO
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
MF GO:0019843 rRNA binding IEP Predicted GO
BP GO:0022607 cellular component assembly IEP Predicted GO
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Predicted GO
BP GO:0031167 rRNA methylation IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034622 cellular protein-containing complex assembly IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0035596 methylthiotransferase activity IEP Predicted GO
BP GO:0042254 ribosome biogenesis IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0043933 protein-containing complex subunit organization IEP Predicted GO
BP GO:0044085 cellular component biogenesis IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044267 cellular protein metabolic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0050497 transferase activity, transferring alkylthio groups IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0065003 protein-containing complex assembly IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP Predicted GO
BP GO:0070475 rRNA base methylation IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR031309 Ribosomal_L5_C 66 164
IPR031310 Ribosomal_L5_N 9 62
No external refs found!