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  5. Sobic.004G107200.2

Sobic.004G107200.2


Description : regulatory deubiquitinase *(UBP15) & deubiquitinase *(UBP15-21)


Gene families : OG_42_0000241 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000241_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G107200.2
Cluster HCAA Clusters: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Bradi3g38400 No alias ubiquitin-specific protease 17 0.03 Orthogroups_2024-Update
Brara.F02412.1 No alias deubiquitinase *(UBP15-21) 0.03 Orthogroups_2024-Update
Glyma.06G093500 No alias ubiquitin-specific protease 16 0.03 Orthogroups_2024-Update
Glyma.15G248200 No alias ubiquitin-specific protease 15 0.02 Orthogroups_2024-Update
HORVU6Hr1G043690.16 No alias regulatory deubiquitinase *(UBP15) & deubiquitinase *(UBP15-21) 0.04 Orthogroups_2024-Update
HORVU7Hr1G111430.5 No alias deubiquitinase *(UBP15-21) 0.02 Orthogroups_2024-Update
Kfl00042_0090 kfl00042_0090_v1.... (at1g32850 : 120.0) ubiquitin-specific protease 11... 0.02 Orthogroups_2024-Update
Kfl00068_0060 kfl00068_0060_v1.1 (at2g24640 : 462.0) ubiquitin-specific protease 19... 0.01 Orthogroups_2024-Update
Seita.1G020500.1 No alias regulatory deubiquitinase *(UBP15) & deubiquitinase *(UBP15-21) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004843 thiol-dependent ubiquitin-specific protease activity IEA 16Dec
BP GO:0016579 protein deubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003747 translation release factor activity IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0004427 inorganic diphosphatase activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
MF GO:0005515 protein binding IEP Predicted GO
BP GO:0006139 nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006260 DNA replication IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006367 transcription initiation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006415 translational termination IEP Predicted GO
BP GO:0006725 cellular aromatic compound metabolic process IEP Predicted GO
BP GO:0007010 cytoskeleton organization IEP Predicted GO
MF GO:0008079 translation termination factor activity IEP Predicted GO
MF GO:0008408 3'-5' exonuclease activity IEP Predicted GO
MF GO:0008987 quinolinate synthetase A activity IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
BP GO:0009435 NAD biosynthetic process IEP Predicted GO
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Predicted GO
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Predicted GO
BP GO:0018130 heterocycle biosynthetic process IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0019674 NAD metabolic process IEP Predicted GO
BP GO:0022411 cellular component disassembly IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0032984 protein-containing complex disassembly IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
BP GO:0034641 cellular nitrogen compound metabolic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
BP GO:0043624 cellular protein complex disassembly IEP Predicted GO
BP GO:0044249 cellular biosynthetic process IEP Predicted GO
BP GO:0046483 heterocycle metabolic process IEP Predicted GO
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Predicted GO
BP GO:0090304 nucleic acid metabolic process IEP Predicted GO
BP GO:1901360 organic cyclic compound metabolic process IEP Predicted GO
BP GO:1901362 organic cyclic compound biosynthetic process IEP Predicted GO
BP GO:1901576 organic substance biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002893 Znf_MYND 88 125
IPR001394 Peptidase_C19_UCH 438 740
No external refs found!