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  5. Sobic.004G109600.1

Sobic.004G109600.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G109600.1
Cluster HCAA Clusters: Cluster_119

Target Alias Description ECC score Gene Family Method Actions
39820 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
A4A49_18667 No alias ring-h2 finger protein atl18 0.03 Orthogroups_2024-Update
Bradi1g29611 No alias RING-H2 finger A3A 0.05 Orthogroups_2024-Update
Bradi1g45727 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g09395 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Bradi3g46030 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g60770 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Brara.A03822.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.B02006.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E02317.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.04 Orthogroups_2024-Update
GRMZM2G015409 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.04G222300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.11G242800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
HORVU2Hr1G079170.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU6Hr1G091610.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU7Hr1G036380.2 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
HORVU7Hr1G080020.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
LOC_Os02g15000 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os02g45390 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g28080 No alias ring-H2 zinc finger protein, putative, expressed 0.02 Orthogroups_2024-Update
MA_10429624g0010 No alias (at3g05200 : 133.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_77628g0010 No alias (at1g72310 : 116.0) Encodes a putative RING-H2 zinc... 0.04 Orthogroups_2024-Update
MA_80729g0030 No alias (at3g16720 : 139.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
PSME_00003016-RA No alias (at1g72200 : 114.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
PSME_00057213-RA No alias (at1g72310 : 115.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
Potri.017G049300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Seita.1G306400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.7G272700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Seita.9G373200.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.009G110400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Solyc02g082420 No alias RING/U-box superfamily protein (AHRD V3.3 *** AT1G20823.1) 0.03 Orthogroups_2024-Update
Solyc06g064440 No alias RING/U-box superfamily protein, putative (AHRD V3.3 *-*... 0.03 Orthogroups_2024-Update
Sopen01g042260 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen11g001310 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.tig00000367.17 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Predicted GO
BP GO:0006576 cellular biogenic amine metabolic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0009308 amine metabolic process IEP Predicted GO
BP GO:0009309 amine biosynthetic process IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Predicted GO
MF GO:0030410 nicotianamine synthase activity IEP Predicted GO
BP GO:0030417 nicotianamine metabolic process IEP Predicted GO
BP GO:0030418 nicotianamine biosynthetic process IEP Predicted GO
MF GO:0042393 histone binding IEP Predicted GO
BP GO:0042401 cellular biogenic amine biosynthetic process IEP Predicted GO
BP GO:0044106 cellular amine metabolic process IEP Predicted GO
MF GO:0051020 GTPase binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
BP GO:0072350 tricarboxylic acid metabolic process IEP Predicted GO
BP GO:0072351 tricarboxylic acid biosynthetic process IEP Predicted GO
MF GO:0098772 molecular function regulator IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 140 183
No external refs found!