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  5. Sobic.004G109900.1

Sobic.004G109900.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G109900.1
Cluster HCAA Clusters: Cluster_213

Target Alias Description ECC score Gene Family Method Actions
137213 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
A4A49_36900 No alias putative ring-h2 finger protein atl37 0.02 Orthogroups_2024-Update
At5g10380 No alias E3 ubiquitin-protein ligase RING1... 0.03 Orthogroups_2024-Update
Bradi4g13960 No alias RING/U-box superfamily protein 0.07 Orthogroups_2024-Update
Bradi5g19490 No alias RING-H2 finger A3A 0.03 Orthogroups_2024-Update
Bradi5g19960 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.A02910.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Brara.A03446.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.D02177.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00161.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00283.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.E00442.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.E02690.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.E03386.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.G03107.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.H02311.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I03307.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I04147.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre11.g476250 No alias Zinc finger, C3HC4 type (RING finger) family protein 0.01 Orthogroups_2024-Update
Cre16.g651400 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G031280 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G146847 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.02G210700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G203400 No alias RING/U-box superfamily protein 0.08 Orthogroups_2024-Update
Glyma.03G239900 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.04G153500 No alias AtL5 0.03 Orthogroups_2024-Update
Glyma.06G150400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G289100 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.11G172300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.12G208600 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Glyma.13G232800 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.18G025700 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G212000 No alias AtL5 0.02 Orthogroups_2024-Update
HORVU2Hr1G074210.1 No alias regulatory ubiquitin-protein ligase *(PRU2) 0.03 Orthogroups_2024-Update
HORVU2Hr1G077490.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
HORVU2Hr1G105980.2 No alias Unknown function 0.04 Orthogroups_2024-Update
LOC_Os01g55110 No alias RING-H2 finger protein, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os04g34230 No alias RING-H2 finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os05g45060 No alias RING-H2 finger protein ATL2M, putative, expressed 0.02 Orthogroups_2024-Update
MA_101154g0010 No alias (at3g16720 : 130.0) RING-H2 protein induced after... 0.03 Orthogroups_2024-Update
MA_12363g0010 No alias (at1g72310 : 126.0) Encodes a putative RING-H2 zinc... 0.03 Orthogroups_2024-Update
MA_25345g0010 No alias (at1g49230 : 107.0) RING/U-box superfamily protein;... 0.04 Orthogroups_2024-Update
MA_634100g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
PSME_00051567-RA No alias (at3g16720 : 108.0) RING-H2 protein induced after... 0.08 Orthogroups_2024-Update
Potri.001G279200 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
Potri.003G073300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.009G110000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.019G091400 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Pp1s71_162V6 No alias ring finger 0.01 Orthogroups_2024-Update
Seita.1G379200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.5G309700.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Seita.7G095300.1 No alias regulatory ubiquitin-protein ligase *(PRU2) &... 0.03 Orthogroups_2024-Update
Seita.7G110600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.007G165000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.009G110400.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Solyc04g074820 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen02g031720 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen03g031440 No alias Ring finger domain 0.02 Orthogroups_2024-Update
Sopen12g024180 No alias Ring finger domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 141 184
No external refs found!