- Species
- Tools
- Expression Profiles
- Compare profiles
- Create heatmap
- Export expression levels
- Expression Specificity
- Compare specificities
- Find specific profiles
- Co-expression Networks
- Create custom network
- Find enriched clusters
- Search
Description : RING-H2-class ATL-subclass E3 ubiquitin ligase
Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.004G110300.1 | |
| Cluster | HCAA Clusters: Cluster_55 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| 412609 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| A4A49_38971 | No alias | ring-h2 finger protein atl72 | 0.02 | Orthogroups_2024-Update | |
| At3g10910 | No alias | RING-H2 finger protein ATL72... | 0.04 | Orthogroups_2024-Update | |
| At4g17245 | No alias | AT4g17240/dl4655c [Source:UniProtKB/TrEMBL;Acc:Q940N3] | 0.02 | Orthogroups_2024-Update | |
| Bradi1g06330 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi2g22650 | No alias | RING/U-box superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi3g09395 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi4g02830 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Bradi5g11880 | No alias | RING/U-box superfamily protein | 0.04 | Orthogroups_2024-Update | |
| Glyma.10G289100 | No alias | RING/U-box superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU3Hr1G028260.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| HORVU5Hr1G082840.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| HORVU7Hr1G121570.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update | |
| LOC_Os01g11480 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os01g61470 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os02g15020 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os06g16060 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.02 | Orthogroups_2024-Update | |
| LOC_Os07g06540 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.04 | Orthogroups_2024-Update | |
| LOC_Os12g24490 | No alias | zinc finger, C3HC4 type domain containing protein, expressed | 0.03 | Orthogroups_2024-Update | |
| MA_9515738g0010 | No alias | (at5g17600 : 145.0) RING/U-box superfamily protein;... | 0.02 | Orthogroups_2024-Update | |
| PSME_00024216-RA | No alias | (at1g49230 : 130.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| PSME_00033978-RA | No alias | (at5g01880 : 110.0) RING/U-box superfamily protein;... | 0.03 | Orthogroups_2024-Update | |
| Potri.008G018900 | No alias | RING/U-box superfamily protein | 0.02 | Orthogroups_2024-Update | |
| Seita.1G306500.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| Sobic.003G339400.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.003G344400.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.006G193000.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.04 | Orthogroups_2024-Update | |
| Sobic.010G158500.1 | No alias | RING-H2-class ATL-subclass E3 ubiquitin ligase | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0000166 | nucleotide binding | IEP | Predicted GO |
| MF | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity | IEP | Predicted GO |
| BP | GO:0006528 | asparagine metabolic process | IEP | Predicted GO |
| BP | GO:0006529 | asparagine biosynthetic process | IEP | Predicted GO |
| BP | GO:0008652 | cellular amino acid biosynthetic process | IEP | Predicted GO |
| BP | GO:0009066 | aspartate family amino acid metabolic process | IEP | Predicted GO |
| BP | GO:0009067 | aspartate family amino acid biosynthetic process | IEP | Predicted GO |
| MF | GO:0016879 | ligase activity, forming carbon-nitrogen bonds | IEP | Predicted GO |
| MF | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor | IEP | Predicted GO |
| MF | GO:0017076 | purine nucleotide binding | IEP | Predicted GO |
| MF | GO:0030554 | adenyl nucleotide binding | IEP | Predicted GO |
| MF | GO:0032553 | ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032555 | purine ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0032559 | adenyl ribonucleotide binding | IEP | Predicted GO |
| MF | GO:0097367 | carbohydrate derivative binding | IEP | Predicted GO |
| MF | GO:1901265 | nucleoside phosphate binding | IEP | Predicted GO |
| BP | GO:1901605 | alpha-amino acid metabolic process | IEP | Predicted GO |
| BP | GO:1901607 | alpha-amino acid biosynthetic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR001841 | Znf_RING | 107 | 150 |
| No external refs found! |