Sobic.004G113300.1

Description : cyclic nucleotide-gated cation channel *(CNGC)

Gene families : OG_42_0000108 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000108_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G113300.1
Cluster	HCAA Clusters: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
A4A49_22015	No alias	putative cyclic nucleotide-gated ion channel 15	0.03	Orthogroups_2024-Update
At2g24610	No alias	cyclic nucleotide-gated channel 14 [Source:TAIR;Acc:AT2G24610]	0.03	Orthogroups_2024-Update
Brara.E02422.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.02	Orthogroups_2024-Update
GRMZM2G077828	No alias	cyclic nucleotide gated channel 7	0.03	Orthogroups_2024-Update
GRMZM5G858887	No alias	Cyclic nucleotide-regulated ion channel family protein	0.03	Orthogroups_2024-Update
GRMZM6G059647	No alias	cyclic nucleotide-gated channel 18	0.03	Orthogroups_2024-Update
Glyma.03G257133	No alias	cyclic nucleotide gated channel 1	0.04	Orthogroups_2024-Update
Glyma.08G241600	No alias	Cyclic nucleotide-regulated ion channel family protein	0.03	Orthogroups_2024-Update
Glyma.16G025400	No alias	cyclic nucleotide-gated channel 13	0.03	Orthogroups_2024-Update
HORVU5Hr1G065950.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.03	Orthogroups_2024-Update
LOC_Os02g41710	No alias	cyclic nucleotide-gated ion channel, putative, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g33570	No alias	cyclic nucleotide-gated ion channel 1, putative, expressed	0.02	Orthogroups_2024-Update
MA_10431327g0020	No alias	(at5g54250 : 177.0) member of Cyclic nucleotide gated...	0.04	Orthogroups_2024-Update
MA_167620g0010	No alias	(at5g15410 : 804.0) 'defense, no death' gene (DND1)...	0.03	Orthogroups_2024-Update
Potri.017G089800	No alias	Cyclic nucleotide-regulated ion channel family protein	0.03	Orthogroups_2024-Update
Sobic.009G188800.1	No alias	cyclic nucleotide-gated cation channel *(CNGC)	0.05	Orthogroups_2024-Update
Solyc09g007840	No alias	Cyclic nucleotide-gated channel (AHRD V3.3 *** A0A0K9PRG4_ZOSMR)	0.03	Orthogroups_2024-Update
Sopen06g005020	No alias	Integrase core domain	0.03	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	ion channel activity	IEA	16Dec
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006811	ion transport	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015075	ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015318	inorganic molecular entity transmembrane transporter activity	None	Extended
CC	GO:0016020	membrane	IEA	16Dec
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022838	substrate-specific channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	16Dec

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Type	GO Term	Name	Evidence	Source
MF	GO:0003993	acid phosphatase activity	IEP	Predicted GO
MF	GO:0004521	endoribonuclease activity	IEP	Predicted GO
MF	GO:0004523	RNA-DNA hybrid ribonuclease activity	IEP	Predicted GO
MF	GO:0004650	polygalacturonase activity	IEP	Predicted GO
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0006873	cellular ion homeostasis	IEP	Predicted GO
BP	GO:0006875	cellular metal ion homeostasis	IEP	Predicted GO
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Predicted GO
MF	GO:0016891	endoribonuclease activity, producing 5'-phosphomonoesters	IEP	Predicted GO
MF	GO:0016893	endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Predicted GO
BP	GO:0019725	cellular homeostasis	IEP	Predicted GO
BP	GO:0030003	cellular cation homeostasis	IEP	Predicted GO
BP	GO:0030026	cellular manganese ion homeostasis	IEP	Predicted GO
MF	GO:0030599	pectinesterase activity	IEP	Predicted GO
BP	GO:0042545	cell wall modification	IEP	Predicted GO
BP	GO:0042592	homeostatic process	IEP	Predicted GO
BP	GO:0045229	external encapsulating structure organization	IEP	Predicted GO
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Predicted GO
BP	GO:0046916	cellular transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0048878	chemical homeostasis	IEP	Predicted GO
BP	GO:0050801	ion homeostasis	IEP	Predicted GO
BP	GO:0055065	metal ion homeostasis	IEP	Predicted GO
BP	GO:0055071	manganese ion homeostasis	IEP	Predicted GO
BP	GO:0055076	transition metal ion homeostasis	IEP	Predicted GO
BP	GO:0055080	cation homeostasis	IEP	Predicted GO
BP	GO:0055082	cellular chemical homeostasis	IEP	Predicted GO
BP	GO:0065008	regulation of biological quality	IEP	Predicted GO
BP	GO:0071555	cell wall organization	IEP	Predicted GO
BP	GO:0098771	inorganic ion homeostasis	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000595	cNMP-bd_dom	430	516
IPR005821	Ion_trans_dom	19	333

External Links

No external refs found!

Sobic.004G113300.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation