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  5. Sobic.004G152000.1

Sobic.004G152000.1


Description : component *(RPA1) of single-stranded-DNA binding RPA complex & component *(RPA1) of RPA presynaptic filament assembly factor complex


Gene families : OG_42_0002224 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002224_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G152000.1
Cluster HCAA Clusters: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
Glyma.09G213500 No alias Replication factor-A protein 1-related 0.03 Orthogroups_2024-Update
Sopen05g020190 No alias Replication factor-A C terminal domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003677 DNA binding IEA 16Dec
CC GO:0005634 nucleus IEA 16Dec
BP GO:0006260 DNA replication IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0005516 calmodulin binding IEP Predicted GO
BP GO:0006352 DNA-templated transcription, initiation IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 846 861
IPR031657 REPA_OB_2 437 541
IPR013955 Rep_factor-A_C 597 748
IPR007199 Rep_factor-A_N 40 150
IPR004365 NA-bd_OB_tRNA 326 411
No external refs found!