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  5. Sobic.004G179900.1

Sobic.004G179900.1


Description : subgroup ERF-III transcription factor


Gene families : OG_42_0000000 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G179900.1
Cluster HCAA Clusters: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
A4A49_03202 No alias ethylene-responsive transcription factor erf053 0.02 Orthogroups_2024-Update
A4A49_24041 No alias ethylene-responsive transcription factor 1a 0.02 Orthogroups_2024-Update
AC187157.4_FG001 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
At1g28370 No alias ERF domain protein 11 [Source:TAIR;Acc:AT1G28370] 0.02 Orthogroups_2024-Update
At5g18560 No alias PUCHI [Source:UniProtKB/TrEMBL;Acc:A0A178URC3] 0.03 Orthogroups_2024-Update
Bradi1g36590 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
Bradi2g52370 No alias erf domain protein 9 0.04 Orthogroups_2024-Update
Bradi3g06562 No alias ethylene responsive element binding factor 3 0.06 Orthogroups_2024-Update
Bradi3g18070 No alias ethylene response factor 7 0.04 Orthogroups_2024-Update
Bradi3g50490 No alias ethylene responsive element binding factor 1 0.03 Orthogroups_2024-Update
Bradi5g17640 No alias Integrase-type DNA-binding superfamily protein 0.06 Orthogroups_2024-Update
Brara.C00977.1 No alias subgroup ERF-II transcription factor *(ERF16/17/18) 0.02 Orthogroups_2024-Update
Brara.D01564.1 No alias subgroup ERF-III transcription factor 0.03 Orthogroups_2024-Update
GRMZM2G053503 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G149756 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.03G159800 No alias ethylene responsive element binding factor 3 0.04 Orthogroups_2024-Update
Glyma.06G163700 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.06G295300 No alias Integrase-type DNA-binding superfamily protein 0.03 Orthogroups_2024-Update
Glyma.07G244867 No alias ethylene-responsive element binding protein 0.04 Orthogroups_2024-Update
Glyma.13G233900 No alias ethylene response factor 1 0.03 Orthogroups_2024-Update
Glyma.13G236600 No alias ERF domain protein 12 0.02 Orthogroups_2024-Update
Glyma.13G369400 No alias Integrase-type DNA-binding superfamily protein 0.05 Orthogroups_2024-Update
HORVU3Hr1G026970.1 No alias Unknown function 0.02 Orthogroups_2024-Update
LOC_Os02g38090 No alias AP2 domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g25260 No alias AP2 domain containing protein, expressed 0.04 Orthogroups_2024-Update
MA_12547g0010 No alias (at5g25810 : 85.9) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
MA_42369g0010 No alias (at5g07580 : 93.2) encodes a member of the ERF (ethylene... 0.02 Orthogroups_2024-Update
MA_924346g0010 No alias (at1g77200 : 104.0) encodes a member of the DREB... 0.02 Orthogroups_2024-Update
Mp7g13760.1 No alias transcription factor (DREB) 0.02 Orthogroups_2024-Update
PSME_00009547-RA No alias (at4g17500 : 103.0) Encodes a member of the ERF... 0.03 Orthogroups_2024-Update
PSME_00052454-RA No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
Potri.001G004700 No alias related to AP2 11 0.03 Orthogroups_2024-Update
Potri.005G219600 No alias ethylene responsive element binding factor 3 0.03 Orthogroups_2024-Update
Potri.014G046700 No alias ethylene-responsive element binding factor 13 0.02 Orthogroups_2024-Update
Potri.015G136300 No alias Integrase-type DNA-binding superfamily protein 0.02 Orthogroups_2024-Update
Pp1s276_72V6 No alias ap2 erf domain-containing transcription factor 0.03 Orthogroups_2024-Update
Pp1s8_127V6 No alias transcriptional factor 0.03 Orthogroups_2024-Update
Seita.2G280400.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G207800.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G281000.1 No alias subgroup ERF-IV/DREB2 transcription factor 0.02 Orthogroups_2024-Update
Seita.6G235100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.004G171300.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.005G051200.2 No alias subgroup ERF-X transcription factor 0.04 Orthogroups_2024-Update
Sobic.006G156100.1 No alias subgroup ERF-I transcription factor 0.02 Orthogroups_2024-Update
Sopen06g024300 No alias AP2 domain 0.03 Orthogroups_2024-Update
Sopen11g007720 No alias AP2 domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA 16Dec
BP GO:0006355 regulation of transcription, DNA-templated IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0048364 root development IEP Predicted GO
BP GO:0048367 shoot system development IEP Predicted GO
BP GO:0048731 system development IEP Predicted GO
BP GO:0099402 plant organ development IEP Predicted GO
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 25 75
No external refs found!