Sobic.004G185200.1

Description : HD-ZIP I/II-type transcription factor

Gene families : OG_42_0000184 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G185200.1

Target	Alias	Description	ECC score	Gene Family Method
A4A49_01064	No alias	homeobox-leucine zipper protein hat22	0.03	Orthogroups_2024-Update
A4A49_35452	No alias	homeobox-leucine zipper protein hat4	0.01	Orthogroups_2024-Update
At2g44910	No alias	Uncharacterized protein At2g44910 (Fragment)...	0.03	Orthogroups_2024-Update
At4g16780	No alias	Homeobox-leucine zipper protein HAT4...	0.03	Orthogroups_2024-Update
Bradi3g37810	No alias	homeobox from Arabidopsis thaliana	0.01	Orthogroups_2024-Update
Brara.F03551.1	No alias	HD-ZIP I/II-type transcription factor	0.01	Orthogroups_2024-Update
Brara.I01989.1	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
Glyma.04G049300	No alias	homeobox from Arabidopsis thaliana	0.01	Orthogroups_2024-Update
Glyma.05G062700	No alias	homeobox protein 2	0.03	Orthogroups_2024-Update
Glyma.07G218000	No alias	homeobox-leucine zipper protein 17	0.02	Orthogroups_2024-Update
Glyma.08G148800	No alias	homeobox from Arabidopsis thaliana	0.03	Orthogroups_2024-Update
HORVU1Hr1G082910.2	No alias	HD-ZIP I/II-type transcription factor	0.02	Orthogroups_2024-Update
LOC_Os03g12860	No alias	homeobox associated leucine zipper, putative, expressed	0.01	Orthogroups_2024-Update
PSME_00008883-RA	No alias	(at2g22800 : 108.0) Encodes homeobox protein HAT9.;...	0.01	Orthogroups_2024-Update
PSME_00039873-RA	No alias	(at5g06710 : 208.0) Homeobox-leucine zipper protein.;...	0.01	Orthogroups_2024-Update
Potri.006G071600	No alias	homeobox from Arabidopsis thaliana	0.03	Orthogroups_2024-Update
Pp1s53_4V6	No alias	hat4	0.05	Orthogroups_2024-Update
Seita.6G176400.1	No alias	HD-ZIP I/II-type transcription factor	0.04	Orthogroups_2024-Update
Solyc02g091930	No alias	Homeobox-leucine zipper protein family (AHRD V3.3 ***...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	16Dec
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	16Dec
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IEA	16Dec
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR003106	Leu_zip_homeo	209	242
IPR001356	Homeobox_dom	153	207

External Links

No external refs found!

Sobic.004G185200.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation