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  5. Sobic.004G186900.1

Sobic.004G186900.1


Description : regulatory factor *(RBP45/47) of mRNA stress granule formation


Gene families : OG_42_0000344 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000344_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G186900.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
A4A49_09844 No alias polyadenylate-binding protein rbp47c 0.02 Orthogroups_2024-Update
Bradi3g46470 No alias RNA-binding protein 47C 0.05 Orthogroups_2024-Update
Brara.I01742.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.02 Orthogroups_2024-Update
LOC_Os09g28810 No alias RNA recognition motif containing protein, putative, expressed 0.03 Orthogroups_2024-Update
Potri.009G054400 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Orthogroups_2024-Update
Seita.7G245500.1 No alias regulatory factor *(RBP45/47) of mRNA stress granule formation 0.03 Orthogroups_2024-Update
Sopen04g032920 No alias RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP Predicted GO
BP GO:0000097 sulfur amino acid biosynthetic process IEP Predicted GO
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006520 cellular amino acid metabolic process IEP Predicted GO
BP GO:0006534 cysteine metabolic process IEP Predicted GO
BP GO:0006555 methionine metabolic process IEP Predicted GO
BP GO:0006790 sulfur compound metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
MF GO:0008172 S-methyltransferase activity IEP Predicted GO
BP GO:0009066 aspartate family amino acid metabolic process IEP Predicted GO
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Predicted GO
BP GO:0009069 serine family amino acid metabolic process IEP Predicted GO
BP GO:0009086 methionine biosynthetic process IEP Predicted GO
BP GO:0009092 homoserine metabolic process IEP Predicted GO
MF GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity IEP Predicted GO
MF GO:0015020 glucuronosyltransferase activity IEP Predicted GO
BP GO:0019346 transsulfuration IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
MF GO:0042085 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0050667 homocysteine metabolic process IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR000504 RRM_dom 204 274
IPR000504 RRM_dom 111 177
IPR000504 RRM_dom 305 368
No external refs found!