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  5. Sobic.004G192800.1

Sobic.004G192800.1


Description : component of FtsH3/10 matrix-AAA protease heterodimer


Gene families : OG_42_0002873 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002873_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G192800.1
Cluster HCAA Clusters: Cluster_164

Target Alias Description ECC score Gene Family Method Actions
At5g40770 No alias Prohibitin-3, mitochondrial... 0.02 Orthogroups_2024-Update
Brara.D01092.1 No alias component of FtsH3/10 matrix-AAA protease heterodimer 0.04 Orthogroups_2024-Update
Brara.I00283.1 No alias component of FtsH3/10 matrix-AAA protease heterodimer 0.04 Orthogroups_2024-Update
Potri.017G065800 No alias prohibitin 3 0.06 Orthogroups_2024-Update
Pp1s319_35V6 No alias mitochondrial prohibitin 1 0.02 Orthogroups_2024-Update
Solyc11g010190 No alias Prohibitin (AHRD V3.3 *** O04361_TOBAC) 0.03 Orthogroups_2024-Update
Sopen11g008280 No alias SPFH domain / Band 7 family 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
BP GO:0006334 nucleosome assembly IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0015276 ligand-gated ion channel activity IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016859 cis-trans isomerase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0022834 ligand-gated channel activity IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
CC GO:0032993 protein-DNA complex IEP Predicted GO
BP GO:0034728 nucleosome organization IEP Predicted GO
BP GO:0040008 regulation of growth IEP Predicted GO
CC GO:0044815 DNA packaging complex IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
MF GO:0051087 chaperone binding IEP Predicted GO
BP GO:0065004 protein-DNA complex assembly IEP Predicted GO
BP GO:0071824 protein-DNA complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001107 Band_7 35 212
No external refs found!