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  5. Sobic.004G203100.1

Sobic.004G203100.1


Description : component *(VPS20) of ESCRT-III complex


Gene families : OG_42_0004311 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0004311_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G203100.1
Cluster HCAA Clusters: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Glyma.06G155800 No alias vacuolar protein sorting-associated protein 20.2 0.04 Orthogroups_2024-Update
Kfl00656_0020 kfl00656_0020_v1.... (at5g63880 : 155.0) VPS20.1; CONTAINS InterPro DOMAIN/s:... 0.02 Orthogroups_2024-Update
PSME_00020014-RA No alias (at5g09260 : 164.0) vacuolar protein sorting-associated... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0007034 vacuolar transport IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0000062 fatty-acyl-CoA binding IEP Predicted GO
CC GO:0000139 Golgi membrane IEP Predicted GO
BP GO:0000381 regulation of alternative mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004806 triglyceride lipase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005789 endoplasmic reticulum membrane IEP Predicted GO
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to ER IEP Predicted GO
BP GO:0006906 vesicle fusion IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
BP GO:0007029 endoplasmic reticulum organization IEP Predicted GO
BP GO:0007030 Golgi organization IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
BP GO:0016050 vesicle organization IEP Predicted GO
MF GO:0016298 lipase activity IEP Predicted GO
MF GO:0016462 pyrophosphatase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Predicted GO
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Predicted GO
MF GO:0017111 nucleoside-triphosphatase activity IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0031072 heat shock protein binding IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0043484 regulation of RNA splicing IEP Predicted GO
MF GO:0044183 protein binding involved in protein folding IEP Predicted GO
CC GO:0044432 endoplasmic reticulum part IEP Predicted GO
BP GO:0045048 protein insertion into ER membrane IEP Predicted GO
BP GO:0048024 regulation of mRNA splicing, via spliceosome IEP Predicted GO
BP GO:0048280 vesicle fusion with Golgi apparatus IEP Predicted GO
BP GO:0048284 organelle fusion IEP Predicted GO
BP GO:0050684 regulation of mRNA processing IEP Predicted GO
BP GO:0051205 protein insertion into membrane IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0061024 membrane organization IEP Predicted GO
BP GO:0061025 membrane fusion IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0090174 organelle membrane fusion IEP Predicted GO
MF GO:1901567 fatty acid derivative binding IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
BP GO:1903311 regulation of mRNA metabolic process IEP Predicted GO
InterPro domains Description Start Stop
IPR005024 Snf7_fam 17 204
No external refs found!