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  5. Sobic.004G215900.1

Sobic.004G215900.1


Description : phosphorolytic exoribonuclease *(PNP) & EC_2.7 transferase transferring phosphorus-containing group


Gene families : OG_42_0002046 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G215900.1
Cluster HCAA Clusters: Cluster_66

Target Alias Description ECC score Gene Family Method Actions
84724 No alias polyribonucleotide nucleotidyltransferase, putative 0.05 Orthogroups_2024-Update
At5g14580 No alias Polyribonucleotide nucleotidyltransferase 2,... 0.03 Orthogroups_2024-Update
Bradi1g56280 No alias polyribonucleotide nucleotidyltransferase, putative 0.04 Orthogroups_2024-Update
Bradi3g48860 No alias polyribonucleotide nucleotidyltransferase, putative 0.16 Orthogroups_2024-Update
Brara.C00633.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.04 Orthogroups_2024-Update
Brara.J02010.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.08 Orthogroups_2024-Update
HORVU2Hr1G056710.5 No alias EC_2.7 transferase transferring phosphorus-containing... 0.04 Orthogroups_2024-Update
HORVU6Hr1G057570.8 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.12 Orthogroups_2024-Update
Kfl00059_0100 kfl00059_0100_v1.1 (at3g03710 : 796.0) Encodes a chloroplast polynucleotide... 0.02 Orthogroups_2024-Update
Kfl00519_0070 kfl00519_0070_v1.1 (at5g14580 : 753.0) polyribonucleotide... 0.03 Orthogroups_2024-Update
LOC_Os02g40460 No alias S1 RNA binding domain containing protein, expressed 0.08 Orthogroups_2024-Update
Mp7g12350.1 No alias polynucleotide phosphorylase (PNP) 0.02 Orthogroups_2024-Update
Potri.001G347900 No alias polyribonucleotide nucleotidyltransferase, putative 0.06 Orthogroups_2024-Update
Seita.1G235700.1 No alias phosphorolytic exoribonuclease *(PNP) & EC_2.7... 0.16 Orthogroups_2024-Update
Solyc02g086600 No alias polyribonucleotide nucleotidyltransferase (AHRD V3.3 ***... 0.03 Orthogroups_2024-Update
evm.model.contig_647.2 No alias (at3g03710 : 164.0) Encodes a chloroplast polynucleotide... 0.05 Orthogroups_2024-Update
evm.model.tig00020603.86 No alias (at5g14580 : 112.0) polyribonucleotide... 0.02 Orthogroups_2024-Update
evm.model.tig00021073.40 No alias (at5g14580 : 307.0) polyribonucleotide... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA 16Dec
MF GO:0003723 RNA binding IEA 16Dec
BP GO:0006396 RNA processing IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Predicted GO
BP GO:0001522 pseudouridine synthesis IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003887 DNA-directed DNA polymerase activity IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
CC GO:0005741 mitochondrial outer membrane IEP Predicted GO
CC GO:0005759 mitochondrial matrix IEP Predicted GO
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0006400 tRNA modification IEP Predicted GO
BP GO:0008033 tRNA processing IEP Predicted GO
MF GO:0008097 5S rRNA binding IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008173 RNA methyltransferase activity IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008519 ammonium transmembrane transporter activity IEP Predicted GO
BP GO:0009451 RNA modification IEP Predicted GO
MF GO:0009982 pseudouridine synthase activity IEP Predicted GO
BP GO:0015696 ammonium transport IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Predicted GO
MF GO:0016779 nucleotidyltransferase activity IEP Predicted GO
MF GO:0016853 isomerase activity IEP Predicted GO
MF GO:0016866 intramolecular transferase activity IEP Predicted GO
BP GO:0030488 tRNA methylation IEP Predicted GO
CC GO:0030684 preribosome IEP Predicted GO
MF GO:0031267 small GTPase binding IEP Predicted GO
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Predicted GO
CC GO:0031968 organelle outer membrane IEP Predicted GO
CC GO:0031974 membrane-enclosed lumen IEP Predicted GO
CC GO:0032040 small-subunit processome IEP Predicted GO
MF GO:0034061 DNA polymerase activity IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0034708 methyltransferase complex IEP Predicted GO
CC GO:0043233 organelle lumen IEP Predicted GO
CC GO:0043527 tRNA methyltransferase complex IEP Predicted GO
CC GO:0044429 mitochondrial part IEP Predicted GO
CC GO:0070013 intracellular organelle lumen IEP Predicted GO
BP GO:0072488 ammonium transmembrane transport IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
CC GO:0098805 whole membrane IEP Predicted GO
MF GO:0140098 catalytic activity, acting on RNA IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
InterPro domains Description Start Stop
IPR015847 ExoRNase_PH_dom2 210 273
IPR001247 ExoRNase_PH_dom1 77 207
IPR001247 ExoRNase_PH_dom1 388 521
IPR015848 PNPase_PH_RNA-bd_bac/org-type 307 385
IPR003029 S1_domain 687 758
No external refs found!