1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G216400.1

Sobic.004G216400.1


Description : Ran-activating protein of nucleocytoplasmic transport


Gene families : OG_42_0001506 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001506_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G216400.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
114118 No alias RAN GTPase activating protein 1 0.03 Orthogroups_2024-Update
Bradi3g15400 No alias RAN GTPase activating protein 1 0.03 Orthogroups_2024-Update
Brara.I04370.1 No alias Ran-activating protein of nucleocytoplasmic transport 0.03 Orthogroups_2024-Update
GRMZM2G079817 No alias RAN GTPase activating protein 1 0.03 Orthogroups_2024-Update
Seita.3G244900.1 No alias Ran-activating protein of nucleocytoplasmic transport 0.05 Orthogroups_2024-Update
Seita.9G148500.1 No alias Ran-activating protein of nucleocytoplasmic transport 0.15 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003735 structural constituent of ribosome IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005198 structural molecule activity IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005840 ribosome IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006412 translation IEP Predicted GO
BP GO:0006413 translational initiation IEP Predicted GO
BP GO:0006518 peptide metabolic process IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009059 macromolecule biosynthetic process IEP Predicted GO
MF GO:0031369 translation initiation factor binding IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0034645 cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:0043043 peptide biosynthetic process IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
BP GO:0043603 cellular amide metabolic process IEP Predicted GO
BP GO:0043604 amide biosynthetic process IEP Predicted GO
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
BP GO:1901566 organonitrogen compound biosynthetic process IEP Predicted GO
CC GO:1990904 ribonucleoprotein complex IEP Predicted GO
InterPro domains Description Start Stop
IPR025265 WPP_dom 13 108
IPR001611 Leu-rich_rpt 339 361
IPR001611 Leu-rich_rpt 231 250
No external refs found!