1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G218600.1

Sobic.004G218600.1


Description : subunit beta of succinyl-CoA ligase heterodimer


Gene families : OG_42_0005876 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005876_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G218600.1
Cluster HCAA Clusters: Cluster_173

Target Alias Description ECC score Gene Family Method Actions
Brara.G00037.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.02 Orthogroups_2024-Update
Brara.I01256.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.03 Orthogroups_2024-Update
Mp1g04210.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.02 Orthogroups_2024-Update
Pp1s9_103V6 No alias succinate- ligase 0.02 Orthogroups_2024-Update
Seita.1G238300.1 No alias subunit beta of succinyl-CoA ligase heterodimer 0.03 Orthogroups_2024-Update
evm.model.contig_2107.1 No alias (q6k9n6|sucb_orysa : 409.0) Succinyl-CoA ligase... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEP Predicted GO
MF GO:0004788 thiamine diphosphokinase activity IEP Predicted GO
MF GO:0005048 signal sequence binding IEP Predicted GO
CC GO:0005575 cellular_component IEP Predicted GO
CC GO:0005839 proteasome core complex IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0006621 protein retention in ER lumen IEP Predicted GO
BP GO:0006778 porphyrin-containing compound metabolic process IEP Predicted GO
BP GO:0006787 porphyrin-containing compound catabolic process IEP Predicted GO
BP GO:0006807 nitrogen compound metabolic process IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
BP GO:0009056 catabolic process IEP Predicted GO
BP GO:0009057 macromolecule catabolic process IEP Predicted GO
BP GO:0009229 thiamine diphosphate biosynthetic process IEP Predicted GO
BP GO:0009987 cellular process IEP Predicted GO
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Predicted GO
BP GO:0015031 protein transport IEP Predicted GO
BP GO:0015833 peptide transport IEP Predicted GO
BP GO:0015994 chlorophyll metabolic process IEP Predicted GO
BP GO:0015996 chlorophyll catabolic process IEP Predicted GO
BP GO:0016197 endosomal transport IEP Predicted GO
BP GO:0016482 cytosolic transport IEP Predicted GO
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
CC GO:0017119 Golgi transport complex IEP Predicted GO
BP GO:0019538 protein metabolic process IEP Predicted GO
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
BP GO:0019941 modification-dependent protein catabolic process IEP Predicted GO
BP GO:0030258 lipid modification IEP Predicted GO
BP GO:0030259 lipid glycosylation IEP Predicted GO
CC GO:0030906 retromer, cargo-selective complex IEP Predicted GO
MF GO:0030975 thiamine binding IEP Predicted GO
BP GO:0032507 maintenance of protein location in cell IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
BP GO:0033015 tetrapyrrole catabolic process IEP Predicted GO
MF GO:0033218 amide binding IEP Predicted GO
BP GO:0035437 maintenance of protein localization in endoplasmic reticulum IEP Predicted GO
BP GO:0042147 retrograde transport, endosome to Golgi IEP Predicted GO
MF GO:0042277 peptide binding IEP Predicted GO
BP GO:0042357 thiamine diphosphate metabolic process IEP Predicted GO
BP GO:0042440 pigment metabolic process IEP Predicted GO
BP GO:0042886 amide transport IEP Predicted GO
BP GO:0043170 macromolecule metabolic process IEP Predicted GO
BP GO:0043248 proteasome assembly IEP Predicted GO
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Predicted GO
BP GO:0044237 cellular metabolic process IEP Predicted GO
BP GO:0044238 primary metabolic process IEP Predicted GO
BP GO:0044248 cellular catabolic process IEP Predicted GO
BP GO:0044260 cellular macromolecule metabolic process IEP Predicted GO
BP GO:0044265 cellular macromolecule catabolic process IEP Predicted GO
BP GO:0044272 sulfur compound biosynthetic process IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0045185 maintenance of protein location IEP Predicted GO
BP GO:0046149 pigment catabolic process IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
MF GO:0046923 ER retention sequence binding IEP Predicted GO
MF GO:0047746 chlorophyllase activity IEP Predicted GO
BP GO:0051186 cofactor metabolic process IEP Predicted GO
BP GO:0051187 cofactor catabolic process IEP Predicted GO
BP GO:0051235 maintenance of location IEP Predicted GO
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0051651 maintenance of location in cell IEP Predicted GO
MF GO:0070001 aspartic-type peptidase activity IEP Predicted GO
BP GO:0071704 organic substance metabolic process IEP Predicted GO
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Predicted GO
BP GO:0072528 pyrimidine-containing compound biosynthetic process IEP Predicted GO
BP GO:0072595 maintenance of protein localization in organelle IEP Predicted GO
BP GO:1901564 organonitrogen compound metabolic process IEP Predicted GO
BP GO:1901575 organic substance catabolic process IEP Predicted GO
MF GO:1901681 sulfur compound binding IEP Predicted GO
InterPro domains Description Start Stop
IPR013650 ATP-grasp_succ-CoA_synth-type 29 237
IPR005811 CoA_ligase 297 417
No external refs found!