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  5. Sobic.004G223900.1

Sobic.004G223900.1


Description : Unknown function


Gene families : OG_42_0006354 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0006354_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G223900.1
Cluster HCAA Clusters: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
Bradi1g10600 No alias Surfeit locus protein 6 0.03 Orthogroups_2024-Update
Bradi3g49500 No alias Surfeit locus protein 6 0.03 Orthogroups_2024-Update
Brara.C00208.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Cre02.g082300 No alias Surfeit locus protein 6 0.06 Orthogroups_2024-Update
Glyma.19G074500 No alias Surfeit locus protein 6 0.04 Orthogroups_2024-Update
HORVU6Hr1G059370.2 No alias Unknown function 0.05 Orthogroups_2024-Update
Seita.1G244300.1 No alias Unknown function 0.14 Orthogroups_2024-Update
Sopen02g026790 No alias Surfeit locus protein 6 0.02 Orthogroups_2024-Update
evm.model.tig00020538.70 No alias no hits & (original description: no original description) 0.06 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000350 generation of catalytic spliceosome for second transesterification step IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0003743 translation initiation factor activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005730 nucleolus IEP Predicted GO
CC GO:0005737 cytoplasm IEP Predicted GO
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Predicted GO
BP GO:0006364 rRNA processing IEP Predicted GO
BP GO:0006396 RNA processing IEP Predicted GO
MF GO:0008135 translation factor activity, RNA binding IEP Predicted GO
BP GO:0016072 rRNA metabolic process IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0022618 ribonucleoprotein complex assembly IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
BP GO:0034470 ncRNA processing IEP Predicted GO
BP GO:0034660 ncRNA metabolic process IEP Predicted GO
CC GO:0043228 non-membrane-bounded organelle IEP Predicted GO
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044444 cytoplasmic part IEP Predicted GO
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Predicted GO
InterPro domains Description Start Stop
IPR029188 Rrp14_N 34 93
IPR029190 Rrp14/SURF6_C 198 364
No external refs found!