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  5. Sobic.004G231300.1

Sobic.004G231300.1


Description : pectin methyltransferase *(QUA2) involved in pectin-dependent cell adhesion


Gene families : OG_42_0002771 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002771_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G231300.1
Cluster HCAA Clusters: Cluster_72

Target Alias Description ECC score Gene Family Method Actions
426562 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 Orthogroups_2024-Update
At1g78240 No alias Probable pectin methyltransferase QUA2... 0.03 Orthogroups_2024-Update
Brara.B03158.1 No alias pectin methyltransferase *(QUA2) involved in... 0.02 Orthogroups_2024-Update
Glyma.04G100700 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 Orthogroups_2024-Update
Glyma.07G226100 No alias QUASIMODO2 LIKE 1 0.04 Orthogroups_2024-Update
MA_10431583g0020 No alias (at1g78240 : 621.0) Encodes TSD2 (TUMOROUS SHOOT... 0.03 Orthogroups_2024-Update
Solyc05g012450 No alias S-adenosyl-L-methionine-dependent methyltransferases... 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0008168 methyltransferase activity IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0006351 transcription, DNA-templated IEP Predicted GO
BP GO:0019438 aromatic compound biosynthetic process IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
BP GO:0097659 nucleic acid-templated transcription IEP Predicted GO
InterPro domains Description Start Stop
IPR004159 Put_SAM_MeTrfase 129 651
No external refs found!