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  5. Sobic.004G238801.1

Sobic.004G238801.1


Description : alpha-class expansin


Gene families : OG_42_0000014 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000014_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G238801.1
Cluster HCAA Clusters: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
236978 No alias expansin A16 0.02 Orthogroups_2024-Update
A4A49_04302 No alias expansin-a10 0.02 Orthogroups_2024-Update
A4A49_20002 No alias expansin-a12 0.01 Orthogroups_2024-Update
A4A49_24822 No alias expansin-a10 0.03 Orthogroups_2024-Update
A4A49_27627 No alias expansin-a4 0.02 Orthogroups_2024-Update
A4A49_38718 No alias expansin-a7 0.01 Orthogroups_2024-Update
A4A49_61517 No alias expansin-a23 0.02 Orthogroups_2024-Update
A4A49_64370 No alias expansin-a1 0.03 Orthogroups_2024-Update
At1g26770 No alias Expansin A10 [Source:UniProtKB/TrEMBL;Acc:F4HPC1] 0.02 Orthogroups_2024-Update
At5g05290 No alias Expansin-A2 [Source:UniProtKB/Swiss-Prot;Acc:Q38866] 0.02 Orthogroups_2024-Update
At5g39310 No alias Expansin-A24 [Source:UniProtKB/Swiss-Prot;Acc:Q9FL76] 0.01 Orthogroups_2024-Update
At5g56320 No alias expansin A14 [Source:TAIR;Acc:AT5G56320] 0.02 Orthogroups_2024-Update
Bradi2g22290 No alias expansin A1 0.07 Orthogroups_2024-Update
Bradi2g53580 No alias expansin A8 0.05 Orthogroups_2024-Update
Bradi3g09950 No alias expansin 11 0.04 Orthogroups_2024-Update
Bradi3g59460 No alias expansin A1 0.03 Orthogroups_2024-Update
Bradi5g04120 No alias expansin 11 0.02 Orthogroups_2024-Update
Brara.B01279.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Brara.C02851.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Brara.D00393.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.E02601.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
Brara.G02887.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.H03119.1 No alias alpha-class expansin 0.02 Orthogroups_2024-Update
Brara.I01201.1 No alias alpha-class expansin 0.01 Orthogroups_2024-Update
GRMZM2G105844 No alias expansin A1 0.02 Orthogroups_2024-Update
GRMZM2G450546 No alias expansin 11 0.01 Orthogroups_2024-Update
Glyma.02G248500 No alias expansin A4 0.03 Orthogroups_2024-Update
Glyma.05G025600 No alias expansin A1 0.02 Orthogroups_2024-Update
Glyma.06G021700 No alias expansin 11 0.02 Orthogroups_2024-Update
Glyma.06G195000 No alias expansin A15 0.02 Orthogroups_2024-Update
Glyma.14G068000 No alias expansin A4 0.04 Orthogroups_2024-Update
Glyma.14G210500 No alias expansin A13 0.03 Orthogroups_2024-Update
Glyma.15G037700 No alias expansin A4 0.02 Orthogroups_2024-Update
Glyma.18G265400 No alias expansin A23 0.01 Orthogroups_2024-Update
LOC_Os01g60770 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g51040 No alias expansin precursor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os03g60720 No alias expansin precursor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g15840 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os06g50400 No alias expansin precursor, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os10g39110 No alias expansin precursor, putative, expressed 0.02 Orthogroups_2024-Update
MA_10232070g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
MA_10377235g0010 No alias (at2g40610 : 412.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
MA_184474g0010 No alias (at2g40610 : 411.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
MA_75790g0010 No alias (at5g05290 : 306.0) Encodes an expansin. Naming... 0.01 Orthogroups_2024-Update
MA_792493g0010 No alias (at1g69530 : 351.0) Member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00006586-RA No alias (at2g40610 : 328.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00011355-RA No alias (at2g40610 : 387.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00014026-RA No alias (at1g69530 : 221.0) Member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00018428-RA No alias (q40636|expa2_orysa : 402.0) Expansin-A2 precursor... 0.01 Orthogroups_2024-Update
PSME_00018430-RA No alias (at2g40610 : 404.0) member of Alpha-Expansin Gene... 0.06 Orthogroups_2024-Update
PSME_00025835-RA No alias (at1g26770 : 394.0) Encodes an expansin. Naming... 0.04 Orthogroups_2024-Update
PSME_00025836-RA No alias (at2g40610 : 399.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00029310-RA No alias (at1g26770 : 386.0) Encodes an expansin. Naming... 0.02 Orthogroups_2024-Update
PSME_00050247-RA No alias (at2g40610 : 400.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00051669-RA No alias (at2g40610 : 425.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00051759-RA No alias (at2g40610 : 368.0) member of Alpha-Expansin Gene... 0.02 Orthogroups_2024-Update
PSME_00051817-RA No alias (at1g20190 : 379.0) member of Alpha-Expansin Gene... 0.03 Orthogroups_2024-Update
PSME_00052085-RA No alias (at1g69530 : 372.0) Member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
PSME_00055878-RA No alias (at5g02260 : 159.0) member of Alpha-Expansin Gene... 0.01 Orthogroups_2024-Update
Potri.001G112866 No alias expansin A18 0.01 Orthogroups_2024-Update
Potri.001G240900 No alias expansin A4 0.01 Orthogroups_2024-Update
Potri.001G401700 No alias expansin 12 0.03 Orthogroups_2024-Update
Potri.004G080200 No alias expansin A13 0.01 Orthogroups_2024-Update
Potri.005G244100 No alias expansin 11 0.04 Orthogroups_2024-Update
Potri.006G108000 No alias expansin A8 0.01 Orthogroups_2024-Update
Potri.016G098700 No alias Barwin-like endoglucanases superfamily protein 0.01 Orthogroups_2024-Update
Pp1s196_30V6 No alias expansin 2 0.01 Orthogroups_2024-Update
Pp1s246_53V6 No alias alpha-expansin 1 0.02 Orthogroups_2024-Update
Pp1s266_66V6 No alias alpha expansin xpa5 0.02 Orthogroups_2024-Update
Pp1s466_14V6 No alias expansin 2 0.01 Orthogroups_2024-Update
Sobic.001G033300.1 No alias alpha-class expansin 0.06 Orthogroups_2024-Update
Solyc05g052250 No alias Expansin (AHRD V3.3 *** G4XZW3_9GENT) 0.04 Orthogroups_2024-Update
Solyc08g080060 No alias Expansin-like protein (AHRD V3.3 *** Q0WT83_ARATH) 0.04 Orthogroups_2024-Update
Sopen06g017810 No alias Rare lipoprotein A (RlpA)-like double-psi beta-barrel 0.02 Orthogroups_2024-Update
Sopen10g035900 No alias Pollen allergen 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 100 188
IPR007117 Expansin_CBD 199 277
No external refs found!