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  5. Sobic.004G241200.1

Sobic.004G241200.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000883 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000883_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G241200.1
Cluster HCAA Clusters: Cluster_77

Target Alias Description ECC score Gene Family Method Actions
Bradi1g46992 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G016362 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G122284 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.018G098500 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Sobic.004G326000.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding IEP Predicted GO
CC GO:0009521 photosystem IEP Predicted GO
CC GO:0009523 photosystem II IEP Predicted GO
CC GO:0009654 photosystem II oxygen evolving complex IEP Predicted GO
BP GO:0015979 photosynthesis IEP Predicted GO
CC GO:0019898 extrinsic component of membrane IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
CC GO:0044436 thylakoid part IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
CC GO:1990204 oxidoreductase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 152 195
No external refs found!