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  5. Sobic.004G247800.1

Sobic.004G247800.1


Description : SETD-type lysine N-methyltransferase


Gene families : OG_42_0005602 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005602_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G247800.1
Cluster HCAA Clusters: Cluster_129

Target Alias Description ECC score Gene Family Method Actions
At1g24610 No alias F21J9.27 [Source:UniProtKB/TrEMBL;Acc:Q9FYK3] 0.02 Orthogroups_2024-Update
Bradi3g56840 No alias Rubisco methyltransferase family protein 0.04 Orthogroups_2024-Update
Brara.I03054.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Glyma.08G045400 No alias Rubisco methyltransferase family protein 0.04 Orthogroups_2024-Update
Potri.008G134200 No alias Rubisco methyltransferase family protein 0.03 Orthogroups_2024-Update
Seita.1G310500.1 No alias SETD-type lysine N-methyltransferase 0.07 Orthogroups_2024-Update
Sopen01g001400 No alias Rubisco LSMT substrate-binding 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003690 double-stranded DNA binding IEP Predicted GO
MF GO:0003697 single-stranded DNA binding IEP Predicted GO
MF GO:0003723 RNA binding IEP Predicted GO
MF GO:0004019 adenylosuccinate synthase activity IEP Predicted GO
MF GO:0004177 aminopeptidase activity IEP Predicted GO
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Predicted GO
MF GO:0005092 GDP-dissociation inhibitor activity IEP Predicted GO
MF GO:0005094 Rho GDP-dissociation inhibitor activity IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
BP GO:0006298 mismatch repair IEP Predicted GO
BP GO:0006399 tRNA metabolic process IEP Predicted GO
BP GO:0007264 small GTPase mediated signal transduction IEP Predicted GO
BP GO:0007265 Ras protein signal transduction IEP Predicted GO
BP GO:0007266 Rho protein signal transduction IEP Predicted GO
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Predicted GO
MF GO:0008175 tRNA methyltransferase activity IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
CC GO:0008290 F-actin capping protein complex IEP Predicted GO
BP GO:0010639 negative regulation of organelle organization IEP Predicted GO
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Predicted GO
MF GO:0016874 ligase activity IEP Predicted GO
CC GO:0030127 COPII vesicle coat IEP Predicted GO
BP GO:0030832 regulation of actin filament length IEP Predicted GO
BP GO:0030833 regulation of actin filament polymerization IEP Predicted GO
BP GO:0030834 regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030835 negative regulation of actin filament depolymerization IEP Predicted GO
BP GO:0030837 negative regulation of actin filament polymerization IEP Predicted GO
MF GO:0030983 mismatched DNA binding IEP Predicted GO
BP GO:0031333 negative regulation of protein complex assembly IEP Predicted GO
BP GO:0032271 regulation of protein polymerization IEP Predicted GO
BP GO:0032272 negative regulation of protein polymerization IEP Predicted GO
BP GO:0032535 regulation of cellular component size IEP Predicted GO
BP GO:0032956 regulation of actin cytoskeleton organization IEP Predicted GO
BP GO:0032970 regulation of actin filament-based process IEP Predicted GO
BP GO:0033043 regulation of organelle organization IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
MF GO:0043021 ribonucleoprotein complex binding IEP Predicted GO
MF GO:0043022 ribosome binding IEP Predicted GO
BP GO:0043242 negative regulation of protein complex disassembly IEP Predicted GO
BP GO:0043244 regulation of protein complex disassembly IEP Predicted GO
BP GO:0043254 regulation of protein complex assembly IEP Predicted GO
BP GO:0044087 regulation of cellular component biogenesis IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051016 barbed-end actin filament capping IEP Predicted GO
BP GO:0051129 negative regulation of cellular component organization IEP Predicted GO
BP GO:0051493 regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051494 negative regulation of cytoskeleton organization IEP Predicted GO
BP GO:0051693 actin filament capping IEP Predicted GO
MF GO:0051920 peroxiredoxin activity IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0071586 CAAX-box protein processing IEP Predicted GO
BP GO:0090066 regulation of anatomical structure size IEP Predicted GO
BP GO:0110053 regulation of actin filament organization IEP Predicted GO
MF GO:0140101 catalytic activity, acting on a tRNA IEP Predicted GO
BP GO:1901879 regulation of protein depolymerization IEP Predicted GO
BP GO:1901880 negative regulation of protein depolymerization IEP Predicted GO
BP GO:1902903 regulation of supramolecular fiber organization IEP Predicted GO
BP GO:1902904 negative regulation of supramolecular fiber organization IEP Predicted GO
InterPro domains Description Start Stop
IPR001214 SET_dom 96 298
IPR015353 Rubisco_LSMT_subst-bd 346 466
No external refs found!