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  5. Sobic.004G249100.1

Sobic.004G249100.1


Description : E3 ubiquitin ligase


Gene families : OG_42_0000634 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000634_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G249100.1
Cluster HCAA Clusters: Cluster_36

Target Alias Description ECC score Gene Family Method Actions
Brara.G01015.1 No alias E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.I01725.1 No alias E3 ubiquitin ligase *(PUB15) 0.02 Orthogroups_2024-Update
HORVU5Hr1G021280.1 No alias E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Potri.009G029600 No alias plant U-box 13 0.05 Orthogroups_2024-Update
Sopen06g032450 No alias Armadillo/beta-catenin-like repeat 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0004842 ubiquitin-protein transferase activity IEA 16Dec
MF GO:0005515 protein binding IEA 16Dec
BP GO:0016567 protein ubiquitination IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR003613 Ubox_domain 263 333
IPR000225 Armadillo 470 508
IPR000225 Armadillo 387 425
No external refs found!