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  5. Sobic.004G254100.1

Sobic.004G254100.1


Description : subfamily ABCG transporter


Gene families : OG_42_0000055 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000055_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G254100.1
Cluster HCAA Clusters: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
441720 No alias pleiotropic drug resistance 7 0.03 Orthogroups_2024-Update
441722 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Cre16.g655450 No alias pleiotropic drug resistance 3 0.02 Orthogroups_2024-Update
GRMZM2G143139 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.03G192700 No alias pleiotropic drug resistance 11 0.02 Orthogroups_2024-Update
Glyma.06G071800 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
Glyma.13G361900 No alias pleiotropic drug resistance 12 0.04 Orthogroups_2024-Update
HORVU7Hr1G088600.8 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
LOC_Os08g43120 No alias Plant PDR ABC transporter associated domain containing... 0.02 Orthogroups_2024-Update
MA_249533g0010 No alias (at2g29940 : 311.0) pleiotropic drug resistance 3... 0.05 Orthogroups_2024-Update
MA_42871g0010 No alias (at1g59870 : 335.0) ATP binding cassette transporter.... 0.03 Orthogroups_2024-Update
PSME_00001762-RA No alias (q5z9s8|pdr12_orysa : 1873.0) Pleiotropic drug... 0.02 Orthogroups_2024-Update
Potri.001G048800 No alias pleiotropic drug resistance 12 0.03 Orthogroups_2024-Update
Potri.008G024400 No alias pleiotropic drug resistance 11 0.03 Orthogroups_2024-Update
Pp1s72_290V6 No alias atp-binding cassette 0.02 Orthogroups_2024-Update
Seita.2G162400.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.5G221300.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Seita.9G187800.1 No alias subfamily ABCG transporter 0.03 Orthogroups_2024-Update
Sobic.003G215600.1 No alias subfamily ABCG transporter 0.02 Orthogroups_2024-Update
Solyc12g100180 No alias Pleiotropic drug resistance ABC transporter (AHRD V3.3... 0.02 Orthogroups_2024-Update
Sopen05g032120 No alias ABC-2 type transporter 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0040008 regulation of growth IEP Predicted GO
BP GO:0045927 positive regulation of growth IEP Predicted GO
BP GO:0048518 positive regulation of biological process IEP Predicted GO
InterPro domains Description Start Stop
IPR013581 PDR_assoc 665 730
IPR003439 ABC_transporter-like 113 295
IPR003439 ABC_transporter-like 813 965
IPR013525 ABC_2_trans 1101 1314
IPR013525 ABC_2_trans 448 660
No external refs found!