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  5. Sobic.004G256200.1

Sobic.004G256200.1


Description : BBX class-II transcription factor


Gene families : OG_42_0001800 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001800_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G256200.1
Cluster HCAA Clusters: Cluster_153

Target Alias Description ECC score Gene Family Method Actions
At3g07650 No alias AT3G07650 protein [Source:UniProtKB/TrEMBL;Acc:A1A6H1] 0.03 Orthogroups_2024-Update
GRMZM2G013398 No alias CONSTANS-like 9 0.02 Orthogroups_2024-Update
GRMZM2G042198 No alias CONSTANS-like 9 0.03 Orthogroups_2024-Update
Glyma.20G060400 No alias CONSTANS-like 9 0.03 Orthogroups_2024-Update
LOC_Os02g49230 No alias CCT/B-box zinc finger protein, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os06g19444 No alias CCT/B-box zinc finger protein, putative, expressed 0.04 Orthogroups_2024-Update
Pp1s36_238V6 No alias sll2 protein 0.02 Orthogroups_2024-Update
Seita.1G301300.1 No alias BBX class-II transcription factor 0.07 Orthogroups_2024-Update
Seita.2G175000.1 No alias BBX class-II transcription factor 0.06 Orthogroups_2024-Update
Solyc07g045180 No alias CONSTANS-like zinc finger protein (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
MF GO:0008270 zinc ion binding IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000159 protein phosphatase type 2A complex IEP Predicted GO
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0000287 magnesium ion binding IEP Predicted GO
CC GO:0000808 origin recognition complex IEP Predicted GO
MF GO:0001882 nucleoside binding IEP Predicted GO
MF GO:0001883 purine nucleoside binding IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004556 alpha-amylase activity IEP Predicted GO
MF GO:0004565 beta-galactosidase activity IEP Predicted GO
MF GO:0004749 ribose phosphate diphosphokinase activity IEP Predicted GO
MF GO:0005525 GTP binding IEP Predicted GO
CC GO:0005634 nucleus IEP Predicted GO
CC GO:0005777 peroxisome IEP Predicted GO
CC GO:0005778 peroxisomal membrane IEP Predicted GO
BP GO:0006721 terpenoid metabolic process IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0008152 metabolic process IEP Predicted GO
CC GO:0008287 protein serine/threonine phosphatase complex IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Predicted GO
BP GO:0009058 biosynthetic process IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
CC GO:0009341 beta-galactosidase complex IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010257 NADH dehydrogenase complex assembly IEP Predicted GO
BP GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly IEP Predicted GO
MF GO:0015925 galactosidase activity IEP Predicted GO
BP GO:0016114 terpenoid biosynthetic process IEP Predicted GO
MF GO:0016160 amylase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
BP GO:0016559 peroxisome fission IEP Predicted GO
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016778 diphosphotransferase activity IEP Predicted GO
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
MF GO:0019842 vitamin binding IEP Predicted GO
MF GO:0019888 protein phosphatase regulator activity IEP Predicted GO
MF GO:0030170 pyridoxal phosphate binding IEP Predicted GO
CC GO:0031903 microbody membrane IEP Predicted GO
MF GO:0032549 ribonucleoside binding IEP Predicted GO
MF GO:0032550 purine ribonucleoside binding IEP Predicted GO
MF GO:0032561 guanyl ribonucleotide binding IEP Predicted GO
MF GO:0036094 small molecule binding IEP Predicted GO
CC GO:0042579 microbody IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
MF GO:0043168 anion binding IEP Predicted GO
CC GO:0043226 organelle IEP Predicted GO
CC GO:0043227 membrane-bounded organelle IEP Predicted GO
CC GO:0043229 intracellular organelle IEP Predicted GO
CC GO:0043231 intracellular membrane-bounded organelle IEP Predicted GO
CC GO:0044438 microbody part IEP Predicted GO
CC GO:0044439 peroxisomal part IEP Predicted GO
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Predicted GO
BP GO:0048285 organelle fission IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0050662 coenzyme binding IEP Predicted GO
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Predicted GO
MF GO:0070279 vitamin B6 binding IEP Predicted GO
MF GO:0097159 organic cyclic compound binding IEP Predicted GO
MF GO:1901363 heterocyclic compound binding IEP Predicted GO
CC GO:1903293 phosphatase complex IEP Predicted GO
InterPro domains Description Start Stop
IPR000315 Znf_B-box 47 89
IPR010402 CCT_domain 349 391
No external refs found!