Sobic.004G272400.1

Description : regulatory protein *(SBA) of mitochondrial nucleoid organization

Gene families : OG_42_0001970 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001970_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.004G272400.1
Cluster	HCAA Clusters: Cluster_164

Target	Alias	Description	ECC score	Gene Family Method
168159	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.02	Orthogroups_2024-Update
A4A49_39242	No alias	cell division control protein 48-like d	0.04	Orthogroups_2024-Update
At2g18330	No alias	AAA-type ATPase family protein...	0.03	Orthogroups_2024-Update
At3g03060	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.03	Orthogroups_2024-Update
At5g16930	No alias	AAA-type ATPase family protein...	0.04	Orthogroups_2024-Update
Brara.A00229.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.03	Orthogroups_2024-Update
Brara.A03846.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.04	Orthogroups_2024-Update
Brara.B00686.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.09	Orthogroups_2024-Update
Brara.E03540.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.03	Orthogroups_2024-Update
Brara.J01839.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.06	Orthogroups_2024-Update
GRMZM2G067242	No alias	AAA-type ATPase family protein	0.04	Orthogroups_2024-Update
GRMZM2G069422	No alias	AAA-type ATPase family protein	0.04	Orthogroups_2024-Update
Glyma.11G069000	No alias	AAA-type ATPase family protein	0.05	Orthogroups_2024-Update
Glyma.11G091700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.1	Orthogroups_2024-Update
Glyma.12G017700	No alias	P-loop containing nucleoside triphosphate hydrolases...	0.05	Orthogroups_2024-Update
Kfl01685_0010	kfl01685_0010_v1....	(at5g16930 : 132.0) AAA-type ATPase family protein;...	0.03	Orthogroups_2024-Update
LOC_Os02g47760	No alias	AAA-type ATPase family protein, putative, expressed	0.03	Orthogroups_2024-Update
Potri.001G458200	No alias	AAA-type ATPase family protein	0.03	Orthogroups_2024-Update
Potri.007G023900	No alias	AAA-type ATPase family protein	0.05	Orthogroups_2024-Update
Pp1s106_174V6	No alias	No description available	0.02	Orthogroups_2024-Update
Seita.1G283400.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.19	Orthogroups_2024-Update
Seita.1G290000.1	No alias	regulatory protein *(SBA) of mitochondrial nucleoid organization	0.17	Orthogroups_2024-Update
Solyc02g062700	No alias	AAA-type ATPase family protein (AHRD V3.3 *** AT2G18330.1)	0.05	Orthogroups_2024-Update
Solyc03g097020	No alias	AAA-type ATPase family protein	0.12	Orthogroups_2024-Update
Sopen02g013720	No alias	Domain of unknown function (DUF3523)	0.11	Orthogroups_2024-Update
Sopen03g027770	No alias	Domain of unknown function (DUF3523)	0.11	Orthogroups_2024-Update
evm.model.contig_3464.1	No alias	(at3g03060 : 297.0) P-loop containing nucleoside...	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	16Dec
MF	GO:0008144	drug binding	None	Extended
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	16Dec
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003697	single-stranded DNA binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
CC	GO:0005730	nucleolus	IEP	Predicted GO
BP	GO:0006364	rRNA processing	IEP	Predicted GO
BP	GO:0006396	RNA processing	IEP	Predicted GO
BP	GO:0006400	tRNA modification	IEP	Predicted GO
BP	GO:0016070	RNA metabolic process	IEP	Predicted GO
BP	GO:0016072	rRNA metabolic process	IEP	Predicted GO
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Predicted GO
CC	GO:0030684	preribosome	IEP	Predicted GO
CC	GO:0032040	small-subunit processome	IEP	Predicted GO
BP	GO:0034470	ncRNA processing	IEP	Predicted GO
BP	GO:0034660	ncRNA metabolic process	IEP	Predicted GO
BP	GO:0040008	regulation of growth	IEP	Predicted GO
BP	GO:0045927	positive regulation of growth	IEP	Predicted GO
BP	GO:0090304	nucleic acid metabolic process	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR021911	DUF3523	69	337
IPR003959	ATPase_AAA_core	407	533

External Links

No external refs found!

Sobic.004G272400.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation