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  5. Sobic.004G273000.1

Sobic.004G273000.1


Description : KANADI-type transcription factor


Gene families : OG_42_0000021 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G273000.1
Cluster HCAA Clusters: Cluster_38

Target Alias Description ECC score Gene Family Method Actions
AC234155.1_FG002 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
At1g32240 No alias Probable transcription factor KAN2... 0.02 Orthogroups_2024-Update
Bradi3g36710 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
GRMZM2G370425 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
HORVU6Hr1G000410.1 No alias KANADI-type transcription factor 0.03 Orthogroups_2024-Update
LOC_Os02g07770 No alias Myb transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
MA_1432g0010 No alias (at3g13040 : 86.3) myb-like HTH transcriptional... 0.04 Orthogroups_2024-Update
Potri.001G133400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.003G096300 No alias Homeodomain-like superfamily protein 0.04 Orthogroups_2024-Update
Potri.005G205900 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G185666 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s112_141V6 No alias transfactor-like protein 0.03 Orthogroups_2024-Update
Pp1s12_158V6 No alias MUJ8.2; myb family transcription factor [Arabidopsis thaliana] 0.02 Orthogroups_2024-Update
Pp1s166_69V6 No alias No description available 0.03 Orthogroups_2024-Update
Pp1s74_161V6 No alias transfactor-like protein 0.03 Orthogroups_2024-Update
Seita.2G118400.1 No alias GARP subgroup PHL transcription factor & transcription... 0.03 Orthogroups_2024-Update
Seita.3G199300.1 No alias GARP subgroup PHL transcription factor 0.03 Orthogroups_2024-Update
Sopen05g034340 No alias MYB-CC type transfactor, LHEQLE motif 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Predicted GO
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Predicted GO
BP GO:0000398 mRNA splicing, via spliceosome IEP Predicted GO
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Predicted GO
MF GO:0003954 NADH dehydrogenase activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
CC GO:0005576 extracellular region IEP Predicted GO
CC GO:0005618 cell wall IEP Predicted GO
BP GO:0006397 mRNA processing IEP Predicted GO
BP GO:0006633 fatty acid biosynthetic process IEP Predicted GO
MF GO:0008137 NADH dehydrogenase (ubiquinone) activity IEP Predicted GO
BP GO:0008380 RNA splicing IEP Predicted GO
BP GO:0016070 RNA metabolic process IEP Predicted GO
BP GO:0016071 mRNA metabolic process IEP Predicted GO
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Predicted GO
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP Predicted GO
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
CC GO:0030312 external encapsulating structure IEP Predicted GO
MF GO:0034062 5'-3' RNA polymerase activity IEP Predicted GO
CC GO:0048046 apoplast IEP Predicted GO
MF GO:0050136 NADH dehydrogenase (quinone) activity IEP Predicted GO
MF GO:0097747 RNA polymerase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 186 237
No external refs found!