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  5. Sobic.004G274600.1

Sobic.004G274600.1


Description : subfamily ABCB transporter


Gene families : OG_42_0000040 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000040_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G274600.1
Cluster HCAA Clusters: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
A4A49_30488 No alias abc transporter b family member 21 0.03 Orthogroups_2024-Update
Bradi2g20170 No alias P-glycoprotein 11 0.05 Orthogroups_2024-Update
Brara.B03326.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
GRMZM2G111462 No alias ABC transporter family protein 0.03 Orthogroups_2024-Update
GRMZM5G843537 No alias P-glycoprotein 11 0.02 Orthogroups_2024-Update
Glyma.10G137600 No alias ATP binding cassette subfamily B4 0.03 Orthogroups_2024-Update
Glyma.16G011000 No alias ATP binding cassette subfamily B19 0.06 Orthogroups_2024-Update
MA_934204g0010 No alias (at3g28345 : 1352.0) ABC transporter family protein;... 0.05 Orthogroups_2024-Update
PSME_00023523-RA No alias (at1g27940 : 1331.0) P-glycoprotein 13 (PGP13);... 0.04 Orthogroups_2024-Update
PSME_00027754-RA No alias (at2g47000 : 1521.0) Multidrug resistance ... 0.02 Orthogroups_2024-Update
PSME_00034484-RA No alias (at2g47000 : 865.0) Multidrug resistance P-glycoprotein... 0.03 Orthogroups_2024-Update
Seita.5G283700.1 No alias subfamily ABCB transporter 0.02 Orthogroups_2024-Update
Sobic.003G139300.3 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.003G267100.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Sobic.007G163800.1 No alias subfamily ABCB transporter 0.03 Orthogroups_2024-Update
Solyc06g009280 No alias ABC transporter B family protein (AHRD V3.3 *** G7IBR0_MEDTR) 0.03 Orthogroups_2024-Update
Sopen02g032160 No alias ABC transporter transmembrane region 0.03 Orthogroups_2024-Update
Sopen12g023550 No alias ABC transporter 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005524 ATP binding IEA 16Dec
CC GO:0016020 membrane IEA 16Dec
BP GO:0055085 transmembrane transport IEA 16Dec
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
InterPro domains Description Start Stop
IPR003439 ABC_transporter-like 1030 1178
IPR003439 ABC_transporter-like 391 540
IPR011527 ABC1_TM_dom 55 321
IPR011527 ABC1_TM_dom 694 964
No external refs found!