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  5. Sobic.004G279000.1

Sobic.004G279000.1


Description : RING-H2-class ATL-subclass E3 ubiquitin ligase


Gene families : OG_42_0000003 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G279000.1
Cluster HCAA Clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
101273 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
A4A49_24557 No alias ring-h2 finger protein atl73 0.01 Orthogroups_2024-Update
A4A49_27114 No alias ring-h2 finger protein atl54 0.02 Orthogroups_2024-Update
A4A49_31261 No alias ring-h2 finger protein atl70 0.01 Orthogroups_2024-Update
A4A49_36505 No alias e3 ubiquitin-protein ligase atl6 0.01 Orthogroups_2024-Update
At1g22500 No alias E3 ubiquitin-protein ligase ATL15... 0.03 Orthogroups_2024-Update
At3g03550 No alias Uncharacterized protein At3g03550... 0.01 Orthogroups_2024-Update
At3g10910 No alias RING-H2 finger protein ATL72... 0.02 Orthogroups_2024-Update
At4g10150 No alias RING-H2 finger protein ATL7... 0.02 Orthogroups_2024-Update
At4g15975 No alias RING/U-box superfamily protein [Source:TAIR;Acc:AT4G15975] 0.03 Orthogroups_2024-Update
Bradi1g32080 No alias RING-H2 finger A3A 0.01 Orthogroups_2024-Update
Bradi2g26403 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
Bradi2g55990 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi4g37430 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Bradi5g09830 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Brara.B02534.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Brara.D02790.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
GRMZM2G004519 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
GRMZM2G050774 No alias RING/U-box superfamily protein 0.05 Orthogroups_2024-Update
GRMZM2G135011 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G301585 No alias TOXICOS EN LEVADURA 2 0.02 Orthogroups_2024-Update
GRMZM2G480106 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Glyma.13G042300 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Glyma.17G068200 No alias RING/U-box superfamily protein 0.06 Orthogroups_2024-Update
HORVU2Hr1G094840.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.05 Orthogroups_2024-Update
HORVU3Hr1G069960.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G072730.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
HORVU4Hr1G022830.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Kfl00212_0070 kfl00212_0070_v1.1 no hits & (original description: no original description) 0.01 Orthogroups_2024-Update
LOC_Os01g53500 No alias RING-H2 finger protein ATL2M, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os02g43120 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os03g22110 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.01 Orthogroups_2024-Update
LOC_Os04g50100 No alias RING-H2 finger protein ATL5G, putative, expressed 0.01 Orthogroups_2024-Update
LOC_Os07g06540 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_280399g0010 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
MA_85088g0010 No alias (at1g49230 : 131.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.001G032300 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.001G162000 No alias RING/U-box superfamily protein 0.02 Orthogroups_2024-Update
Potri.005G036800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.008G018900 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.011G063100 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Potri.T081800 No alias RING/U-box superfamily protein 0.01 Orthogroups_2024-Update
Pp1s133_51V6 No alias ring finger 0.03 Orthogroups_2024-Update
Pp1s257_3V6 No alias ac009177_16 ring-h2 zinc finger protein atl6 0.02 Orthogroups_2024-Update
Seita.1G279400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Seita.2G087800.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.3G389200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Seita.8G248200.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.04 Orthogroups_2024-Update
Sobic.003G147301.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Sobic.003G299800.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.03 Orthogroups_2024-Update
Sobic.004G181300.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.004G181400.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.006G184500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.06 Orthogroups_2024-Update
Sobic.008G030200.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.009G056600.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.02 Orthogroups_2024-Update
Sobic.009G153100.1 No alias Unknown function 0.01 Orthogroups_2024-Update
Sobic.010G158500.1 No alias RING-H2-class ATL-subclass E3 ubiquitin ligase 0.01 Orthogroups_2024-Update
Solyc01g100100 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.01 Orthogroups_2024-Update
Solyc04g014220 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc12g087840 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update
Sopen00g009660 No alias Ring finger domain 0.01 Orthogroups_2024-Update
Sopen01g035320 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen03g041450 No alias Ring finger domain 0.03 Orthogroups_2024-Update
Sopen06g022560 No alias Ring finger domain 0.03 Orthogroups_2024-Update
evm.model.tig00001128.32 No alias no hits & (original description: no original description) 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR001841 Znf_RING 103 147
No external refs found!