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  5. Sobic.004G280900.1

Sobic.004G280900.1


Description : Unknown function


Gene families : OG_42_0000206 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000206_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G280900.1
Cluster HCAA Clusters: Cluster_8

Target Alias Description ECC score Gene Family Method Actions
A4A49_00047 No alias e3 ubiquitin-protein ligase rha2a 0.03 Orthogroups_2024-Update
A4A49_03376 No alias hypothetical protein 0.02 Orthogroups_2024-Update
A4A49_36602 No alias putative e3 ubiquitin-protein ligase xerico 0.03 Orthogroups_2024-Update
At3g61460 No alias BRH1 RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q9XF92] 0.05 Orthogroups_2024-Update
Brara.C02675.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.C02915.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
Brara.D01801.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Brara.G00433.1 No alias E3 ubiquitin ligase *(XERICO) 0.02 Orthogroups_2024-Update
Brara.I02341.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Brara.I04236.1 No alias E3 ubiquitin ligase *(BRH) 0.03 Orthogroups_2024-Update
GRMZM2G134023 No alias brassinosteroid-responsive RING-H2 0.12 Orthogroups_2024-Update
Glyma.04G153400 No alias RING/U-box superfamily protein 0.04 Orthogroups_2024-Update
Glyma.08G016700 No alias brassinosteroid-responsive RING-H2 0.03 Orthogroups_2024-Update
Glyma.18G235600 No alias brassinosteroid-responsive RING-H2 0.04 Orthogroups_2024-Update
HORVU1Hr1G036510.1 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os04g49000 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.03 Orthogroups_2024-Update
LOC_Os07g48680 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
LOC_Os08g06090 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.05 Orthogroups_2024-Update
LOC_Os09g30160 No alias zinc finger, C3HC4 type domain containing protein, expressed 0.02 Orthogroups_2024-Update
MA_15246g0010 No alias (at2g04240 : 83.2) Encodes a small protein with an... 0.03 Orthogroups_2024-Update
MA_169947g0010 No alias (at3g61460 : 156.0) Encodes a novel ring finger protein... 0.04 Orthogroups_2024-Update
MA_46635g0010 No alias no hits & (original description: no original description) 0.04 Orthogroups_2024-Update
MA_4795437g0010 No alias (at3g43430 : 102.0) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
MA_711804g0010 No alias (at3g43430 : 92.4) RING/U-box superfamily protein;... 0.02 Orthogroups_2024-Update
Potri.007G086100 No alias receptor homology region transmembrane domain ring H2... 0.03 Orthogroups_2024-Update
Potri.007G086200 No alias RING/U-box superfamily protein 0.03 Orthogroups_2024-Update
Potri.010G133700 No alias brassinosteroid-responsive RING-H2 0.04 Orthogroups_2024-Update
Seita.1G273100.1 No alias E3 ubiquitin ligase *(BRH) 0.1 Orthogroups_2024-Update
Seita.4G006300.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.6G056400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.003G123300.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.006G189700.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.007G221000.1 No alias E3 ubiquitin ligase *(XERICO) 0.03 Orthogroups_2024-Update
Solyc04g054370 No alias RING/U-box superfamily protein (AHRD V3.3 *-* AT5G41400.1) 0.03 Orthogroups_2024-Update
Solyc05g010170 No alias LOW QUALITY:RING/U-box superfamily protein, putative... 0.02 Orthogroups_2024-Update
Solyc07g045190 No alias RING/U-box superfamily protein, putative (AHRD V3.3 ***... 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003700 DNA-binding transcription factor activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
MF GO:0005543 phospholipid binding IEP Predicted GO
MF GO:0005546 phosphatidylinositol-4,5-bisphosphate binding IEP Predicted GO
BP GO:0006355 regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0006887 exocytosis IEP Predicted GO
BP GO:0008150 biological_process IEP Predicted GO
MF GO:0008289 lipid binding IEP Predicted GO
BP GO:0009719 response to endogenous stimulus IEP Predicted GO
BP GO:0009725 response to hormone IEP Predicted GO
BP GO:0009733 response to auxin IEP Predicted GO
BP GO:0009889 regulation of biosynthetic process IEP Predicted GO
BP GO:0010033 response to organic substance IEP Predicted GO
BP GO:0010468 regulation of gene expression IEP Predicted GO
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Predicted GO
BP GO:0016192 vesicle-mediated transport IEP Predicted GO
BP GO:0016567 protein ubiquitination IEP Predicted GO
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Predicted GO
BP GO:0019222 regulation of metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
BP GO:0031323 regulation of cellular metabolic process IEP Predicted GO
BP GO:0031326 regulation of cellular biosynthetic process IEP Predicted GO
BP GO:0032446 protein modification by small protein conjugation IEP Predicted GO
BP GO:0032940 secretion by cell IEP Predicted GO
MF GO:0035091 phosphatidylinositol binding IEP Predicted GO
BP GO:0042221 response to chemical IEP Predicted GO
MF GO:0043565 sequence-specific DNA binding IEP Predicted GO
CC GO:0044448 cell cortex part IEP Predicted GO
BP GO:0046903 secretion IEP Predicted GO
BP GO:0050789 regulation of biological process IEP Predicted GO
BP GO:0050794 regulation of cellular process IEP Predicted GO
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Predicted GO
BP GO:0051252 regulation of RNA metabolic process IEP Predicted GO
BP GO:0060255 regulation of macromolecule metabolic process IEP Predicted GO
BP GO:0065007 biological regulation IEP Predicted GO
BP GO:0070647 protein modification by small protein conjugation or removal IEP Predicted GO
BP GO:0080090 regulation of primary metabolic process IEP Predicted GO
CC GO:0099023 tethering complex IEP Predicted GO
MF GO:0140110 transcription regulator activity IEP Predicted GO
MF GO:1901981 phosphatidylinositol phosphate binding IEP Predicted GO
MF GO:1902936 phosphatidylinositol bisphosphate binding IEP Predicted GO
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Predicted GO
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Predicted GO
BP GO:2001141 regulation of RNA biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR001841 Znf_RING 111 155
No external refs found!