1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G281800.1

Sobic.004G281800.1


Description : circadian clock factor *(REVEILLE) & transcription factor *(REVEILLE)


Gene families : OG_42_0000380 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000380_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G281800.1
Cluster HCAA Clusters: Cluster_32

Target Alias Description ECC score Gene Family Method Actions
78045 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
A4A49_01132 No alias protein reveille 8 0.04 Orthogroups_2024-Update
At2g46830 No alias Protein CCA1 [Source:UniProtKB/Swiss-Prot;Acc:P92973] 0.03 Orthogroups_2024-Update
At4g01280 No alias Protein REVEILLE 5 [Source:UniProtKB/Swiss-Prot;Acc:C0SVG5] 0.02 Orthogroups_2024-Update
At5g02840 No alias LCL1 [Source:UniProtKB/TrEMBL;Acc:A0A178U8Z5] 0.03 Orthogroups_2024-Update
At5g17300 No alias Protein REVEILLE 1 [Source:UniProtKB/Swiss-Prot;Acc:F4KGY6] 0.03 Orthogroups_2024-Update
At5g37260 No alias Protein REVEILLE 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K5X6] 0.03 Orthogroups_2024-Update
Bradi1g29680 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
Bradi1g32330 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Bradi3g51757 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
Brara.A03523.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Brara.B00704.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Brara.C00086.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.05 Orthogroups_2024-Update
Brara.C00761.1 No alias transcription factor *(REVEILLE) 0.02 Orthogroups_2024-Update
Brara.C01424.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.02 Orthogroups_2024-Update
Brara.E00100.1 No alias circadian clock core oscillator protein *(LHY/CCA1) &... 0.03 Orthogroups_2024-Update
Brara.E03078.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.06 Orthogroups_2024-Update
Brara.F01290.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Brara.I00054.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Brara.J00041.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Brara.J01819.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Brara.J02851.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
Cre12.g514400 No alias circadian clock associated 1 0.02 Orthogroups_2024-Update
GRMZM2G029850 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G118693 No alias Homeodomain-like superfamily protein 0.07 Orthogroups_2024-Update
GRMZM2G145041 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
GRMZM2G170322 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.10G048500 No alias Homeodomain-like superfamily protein 0.06 Orthogroups_2024-Update
Glyma.13G136300 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G217700 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
Glyma.18G237700 No alias Homeodomain-like superfamily protein 0.02 Orthogroups_2024-Update
HORVU0Hr1G031850.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.04 Orthogroups_2024-Update
HORVU6Hr1G066000.2 No alias circadian clock factor *(REVEILLE) & transcription... 0.04 Orthogroups_2024-Update
HORVU7Hr1G001830.3 No alias circadian clock factor *(REVEILLE) & transcription... 0.03 Orthogroups_2024-Update
HORVU7Hr1G121210.4 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
LOC_Os02g45670 No alias myb-like DNA-binding domain containing protein, expressed 0.05 Orthogroups_2024-Update
LOC_Os02g46030 No alias MYB family transcription factor, putative, expressed 0.06 Orthogroups_2024-Update
LOC_Os06g01670 No alias myb-like DNA-binding domain containing protein, expressed 0.08 Orthogroups_2024-Update
LOC_Os06g51260 No alias MYB family transcription factor, putative, expressed 0.05 Orthogroups_2024-Update
MA_115536g0010 No alias (at1g01060 : 122.0) LHY encodes a myb-related putative... 0.04 Orthogroups_2024-Update
Mp2g14310.1 No alias transcription factor (MYB-related). REVEILLE circadian... 0.02 Orthogroups_2024-Update
PSME_00043429-RA No alias (at5g17300 : 121.0) Myb-like transcription factor that... 0.03 Orthogroups_2024-Update
Potri.004G074300 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Potri.015G030400 No alias Homeodomain-like superfamily protein 0.03 Orthogroups_2024-Update
Pp1s198_135V6 No alias dna binding protein 0.02 Orthogroups_2024-Update
Pp1s325_68V6 No alias lhy protein 0.05 Orthogroups_2024-Update
Seita.1G272700.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.11 Orthogroups_2024-Update
Seita.1G275400.1 No alias transcription factor *(REVEILLE) 0.03 Orthogroups_2024-Update
Seita.4G004600.1 No alias circadian clock factor *(REVEILLE) & transcription... 0.07 Orthogroups_2024-Update
Seita.4G288100.1 No alias transcription factor *(REVEILLE) 0.08 Orthogroups_2024-Update
Solyc01g095030 No alias Myb family transcription factor family protein (AHRD... 0.06 Orthogroups_2024-Update
Solyc03g098320 No alias Myb transcription factor (AHRD V3.3 *** A0A072UBN0_MEDTR) 0.03 Orthogroups_2024-Update
Solyc10g084370 No alias MYB transcription factor (AHRD V3.3 *** B5TV64_CAMSI) 0.04 Orthogroups_2024-Update
Sopen01g038820 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen03g029070 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen10g033810 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update
evm.model.contig_2210.1 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.contig_3572.2 No alias no hits & (original description: no original description) 0.02 Orthogroups_2024-Update
evm.model.tig00000769.37 No alias (at3g09600 : 109.0) Homeodomain-like superfamily... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000079 regulation of cyclin-dependent protein serine/threonine kinase activity IEP Predicted GO
BP GO:0001932 regulation of protein phosphorylation IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Predicted GO
MF GO:0015095 magnesium ion transmembrane transporter activity IEP Predicted GO
BP GO:0015693 magnesium ion transport IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0019220 regulation of phosphate metabolic process IEP Predicted GO
MF GO:0019900 kinase binding IEP Predicted GO
MF GO:0019901 protein kinase binding IEP Predicted GO
MF GO:0030151 molybdenum ion binding IEP Predicted GO
BP GO:0031399 regulation of protein modification process IEP Predicted GO
BP GO:0042325 regulation of phosphorylation IEP Predicted GO
BP GO:0043549 regulation of kinase activity IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0045859 regulation of protein kinase activity IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051174 regulation of phosphorus metabolic process IEP Predicted GO
BP GO:0051338 regulation of transferase activity IEP Predicted GO
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Predicted GO
BP GO:0070838 divalent metal ion transport IEP Predicted GO
BP GO:0071900 regulation of protein serine/threonine kinase activity IEP Predicted GO
BP GO:0072511 divalent inorganic cation transport IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1904029 regulation of cyclin-dependent protein kinase activity IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 36 81
No external refs found!