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  5. Sobic.004G303600.1

Sobic.004G303600.1


Description : regulatory protein *(LAF1) of phytochrome signalling pathway & MYB class-R2R3 subgroup-16 transcription factor


Gene families : OG_42_0000002 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G303600.1
Cluster HCAA Clusters: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
84369 No alias myb domain protein 97 0.03 Orthogroups_2024-Update
A4A49_24145 No alias transcription factor myb108 0.03 Orthogroups_2024-Update
AC206901.3_FG005 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
At2g26960 No alias Myb domain protein 81 [Source:UniProtKB/TrEMBL;Acc:Q9SLH1] 0.03 Orthogroups_2024-Update
At3g02940 No alias At3g02940 [Source:UniProtKB/TrEMBL;Acc:Q9LDI5] 0.03 Orthogroups_2024-Update
At3g12720 No alias AT3g12720/MBK21_8 [Source:UniProtKB/TrEMBL;Acc:Q9LTW2] 0.03 Orthogroups_2024-Update
At3g28910 No alias Transcription factor MYB30... 0.03 Orthogroups_2024-Update
At5g40350 No alias Transcription factor MYB24... 0.04 Orthogroups_2024-Update
At5g55020 No alias Transcription factor MYB120... 0.03 Orthogroups_2024-Update
Bradi1g64687 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
Bradi2g46770 No alias myb domain protein 87 0.03 Orthogroups_2024-Update
Bradi3g36370 No alias myb domain protein 43 0.03 Orthogroups_2024-Update
Bradi3g48886 No alias myb domain protein 79 0.03 Orthogroups_2024-Update
Bradi4g04627 No alias myb domain protein 112 0.03 Orthogroups_2024-Update
Bradi5g20130 No alias myb domain protein 63 0.03 Orthogroups_2024-Update
Brara.B01349.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.02 Orthogroups_2024-Update
Brara.G01033.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Brara.G03210.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Brara.H02857.1 No alias MYB class-R2R3 subgroup-1 transcription factor 0.03 Orthogroups_2024-Update
Brara.J01871.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Brara.K01834.1 No alias MYB class-R2R3 subgroup-11 transcription factor 0.04 Orthogroups_2024-Update
GRMZM2G013581 No alias myb domain protein 48 0.05 Orthogroups_2024-Update
GRMZM2G052606 No alias myb domain protein 46 0.03 Orthogroups_2024-Update
GRMZM2G057027 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
GRMZM2G084799 No alias myb domain protein 12 0.03 Orthogroups_2024-Update
GRMZM2G104551 No alias myb domain protein 42 0.02 Orthogroups_2024-Update
GRMZM2G115859 No alias myb domain protein 36 0.06 Orthogroups_2024-Update
GRMZM2G117244 No alias myb domain protein 68 0.03 Orthogroups_2024-Update
GRMZM2G143046 No alias myb domain protein 112 0.03 Orthogroups_2024-Update
GRMZM2G162709 No alias myb domain protein 62 0.03 Orthogroups_2024-Update
GRMZM2G171781 No alias myb domain protein 61 0.03 Orthogroups_2024-Update
GRMZM2G176327 No alias myb domain protein 112 0.03 Orthogroups_2024-Update
GRMZM5G833253 No alias myb domain protein 63 0.02 Orthogroups_2024-Update
Glyma.01G196200 No alias myb domain protein 84 0.03 Orthogroups_2024-Update
Glyma.01G233400 No alias myb domain protein 9 0.02 Orthogroups_2024-Update
Glyma.03G221900 No alias myb domain protein 2 0.04 Orthogroups_2024-Update
Glyma.03G250600 No alias myb domain protein 15 0.04 Orthogroups_2024-Update
Glyma.04G101900 No alias myb domain protein 93 0.04 Orthogroups_2024-Update
Glyma.04G170100 No alias myb domain protein 94 0.03 Orthogroups_2024-Update
Glyma.05G109200 No alias myb domain protein 84 0.03 Orthogroups_2024-Update
Glyma.05G234600 No alias myb domain protein 116 0.03 Orthogroups_2024-Update
Glyma.07G073000 No alias myb domain protein 17 0.03 Orthogroups_2024-Update
Glyma.08G168100 No alias myb domain protein 63 0.03 Orthogroups_2024-Update
Glyma.08G317800 No alias myb domain protein 97 0.03 Orthogroups_2024-Update
Glyma.10G006600 No alias myb domain protein 15 0.04 Orthogroups_2024-Update
Glyma.10G165800 No alias myb domain protein 15 0.02 Orthogroups_2024-Update
Glyma.11G045400 No alias myb domain protein 84 0.03 Orthogroups_2024-Update
Glyma.12G057900 No alias myb domain protein 83 0.03 Orthogroups_2024-Update
Glyma.13G061900 No alias myb domain protein 16 0.03 Orthogroups_2024-Update
Glyma.13G322900 No alias myb domain protein 36 0.03 Orthogroups_2024-Update
Glyma.14G090900 No alias myb domain protein 84 0.03 Orthogroups_2024-Update
Glyma.16G073000 No alias myb domain protein 21 0.03 Orthogroups_2024-Update
Glyma.17G099800 No alias myb domain protein 94 0.04 Orthogroups_2024-Update
Glyma.18G071600 No alias myb domain protein 103 0.03 Orthogroups_2024-Update
Glyma.18G261400 No alias myb domain protein 16 0.03 Orthogroups_2024-Update
Glyma.19G164600 No alias myb domain protein 15 0.04 Orthogroups_2024-Update
Glyma.19G218800 No alias myb domain protein 2 0.02 Orthogroups_2024-Update
Glyma.19G248100 No alias myb domain protein 15 0.03 Orthogroups_2024-Update
HORVU1Hr1G051980.2 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU2Hr1G027600.2 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
HORVU2Hr1G081720.2 No alias transcriptional regulator *(MS188) & transcriptional... 0.04 Orthogroups_2024-Update
HORVU3Hr1G065880.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.05 Orthogroups_2024-Update
HORVU3Hr1G116740.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
HORVU4Hr1G054420.3 No alias MYB class-R2R3 subgroup-7 transcription factor 0.06 Orthogroups_2024-Update
HORVU5Hr1G060650.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
HORVU5Hr1G081770.2 No alias MYB class-R2R3 transcription factor 0.04 Orthogroups_2024-Update
HORVU6Hr1G060600.2 No alias Unknown function 0.03 Orthogroups_2024-Update
LOC_Os01g36460 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os01g49160 No alias MYB family transcription factor, putative, expressed 0.02 Orthogroups_2024-Update
LOC_Os05g46610 No alias myb-like DNA-binding domain containing protein,... 0.03 Orthogroups_2024-Update
LOC_Os05g48010 No alias MYB family transcription factor, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os08g33660 No alias MYB family transcription factor, putative, expressed 0.03 Orthogroups_2024-Update
LOC_Os12g33070 No alias myb-like DNA-binding domain containing protein,... 0.02 Orthogroups_2024-Update
MA_10435612g0010 No alias (at5g15310 : 300.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
MA_128244g0010 No alias (at3g61250 : 275.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
MA_190973g0010 No alias (p20026|myb1_horvu : 239.0) Myb-related protein Hv1 -... 0.03 Orthogroups_2024-Update
MA_33964g0010 No alias (at5g16600 : 262.0) Encodes a putative transcription... 0.07 Orthogroups_2024-Update
MA_460508g0010 No alias (q7xbh4|myb4_orysa : 200.0) Myb-related protein Myb4... 0.03 Orthogroups_2024-Update
MA_8626g0010 No alias (at1g22640 : 166.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00010370-RA No alias (at5g62470 : 192.0) Encodes a R2R3 type Myb... 0.03 Orthogroups_2024-Update
PSME_00014838-RA No alias (at3g12720 : 234.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00021697-RA No alias (at5g15310 : 302.0) Member of the R2R3 factor gene... 0.05 Orthogroups_2024-Update
PSME_00026452-RA No alias (at3g61250 : 251.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00030815-RA No alias (at1g09540 : 235.0) Encodes putative transcription... 0.03 Orthogroups_2024-Update
PSME_00031962-RA No alias (at4g13480 : 170.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00035153-RA No alias (at3g02940 : 237.0) Encodes a putative transcription... 0.08 Orthogroups_2024-Update
PSME_00035672-RA No alias (at1g22640 : 238.0) MYB-type transcription factor (MYB3)... 0.03 Orthogroups_2024-Update
PSME_00036696-RA No alias (at5g16770 : 208.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00039845-RA No alias (at4g38620 : 241.0) Encodes a R2R3 MYB protein which is... 0.04 Orthogroups_2024-Update
PSME_00041780-RA No alias (at4g38620 : 265.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
PSME_00041883-RA No alias (at3g61250 : 276.0) Member of the R2R3 factor gene... 0.03 Orthogroups_2024-Update
PSME_00043973-RA No alias (at1g22640 : 191.0) MYB-type transcription factor (MYB3)... 0.04 Orthogroups_2024-Update
PSME_00045716-RA No alias (at5g15310 : 288.0) Member of the R2R3 factor gene... 0.04 Orthogroups_2024-Update
PSME_00052494-RA No alias (q7xbh4|myb4_orysa : 219.0) Myb-related protein Myb4... 0.05 Orthogroups_2024-Update
PSME_00052777-RA No alias (at4g38620 : 269.0) Encodes a R2R3 MYB protein which is... 0.03 Orthogroups_2024-Update
Potri.002G038500 No alias myb domain protein 14 0.04 Orthogroups_2024-Update
Potri.002G173900 No alias myb domain protein 3 0.04 Orthogroups_2024-Update
Potri.003G132000 No alias myb domain protein 103 0.03 Orthogroups_2024-Update
Potri.003G189700 No alias myb domain protein 33 0.05 Orthogroups_2024-Update
Potri.006G221200 No alias myb domain protein 5 0.03 Orthogroups_2024-Update
Potri.006G221500 No alias Duplicated homeodomain-like superfamily protein 0.05 Orthogroups_2024-Update
Pp1s204_13V6 No alias MDA7.17; myb family transcription factor [Arabidopsis thaliana] 0.03 Orthogroups_2024-Update
Seita.1G250900.1 No alias accessory protein (LMI2) of floral meristem identity control 0.04 Orthogroups_2024-Update
Seita.1G281500.1 No alias MYB class-R2R3 subgroup-3 transcription factor 0.03 Orthogroups_2024-Update
Seita.2G289900.1 No alias MYB class-R2R3 subgroup-4 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G055800.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.03 Orthogroups_2024-Update
Seita.3G161500.1 No alias MYB class-R2R3 subgroup-13 transcription factor 0.04 Orthogroups_2024-Update
Seita.3G333800.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.05 Orthogroups_2024-Update
Seita.5G087200.1 No alias MYB class-R2R3 subgroup-19/20 transcription factor 0.03 Orthogroups_2024-Update
Seita.5G135700.1 No alias MYB class-R2R3 subgroup-14 transcription factor 0.03 Orthogroups_2024-Update
Seita.5G283200.1 No alias MYB class-R2R3 transcription factor 0.05 Orthogroups_2024-Update
Seita.6G154200.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Seita.7G167300.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.04 Orthogroups_2024-Update
Seita.7G179800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.9G222100.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.04 Orthogroups_2024-Update
Seita.9G544000.1 No alias MYB class-R2R3 transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G183100.1 No alias MYB class-R2R3 subgroup-18 transcription factor 0.03 Orthogroups_2024-Update
Sobic.001G204400.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Sobic.002G196100.1 No alias MYB class-R2R3 transcription factor 0.06 Orthogroups_2024-Update
Sobic.005G224700.1 No alias Unknown function 0.05 Orthogroups_2024-Update
Sobic.006G148000.1 No alias MYB class-R2R3 subgroup-2 transcription factor 0.03 Orthogroups_2024-Update
Solyc02g067340 No alias R2R3MYB transcription factor 96 0.02 Orthogroups_2024-Update
Solyc02g082040 No alias R2R3MYB transcription factor 56 0.04 Orthogroups_2024-Update
Solyc05g008250 No alias R2R3MYB transcription factor 76 0.02 Orthogroups_2024-Update
Solyc06g083900 No alias R2R3MYB transcription factor 13 0.04 Orthogroups_2024-Update
Solyc07g006750 No alias blind-like8 0.03 Orthogroups_2024-Update
Solyc07g055000 No alias R2R3MYB transcription factor 72 0.05 Orthogroups_2024-Update
Solyc10g005550 No alias R2R3MYB transcription factor 63 0.02 Orthogroups_2024-Update
Solyc10g005760 No alias R2R3MYB transcription factor 80 0.03 Orthogroups_2024-Update
Solyc10g008700 No alias R2R3MYB transcription factor 49 0.03 Orthogroups_2024-Update
Solyc12g099120 No alias Abscisic acid induced MYB1 0.02 Orthogroups_2024-Update
Solyc12g099140 No alias R2R3MYB transcription factor 45 0.03 Orthogroups_2024-Update
Sopen03g004680 No alias Myb-like DNA-binding domain 0.03 Orthogroups_2024-Update
Sopen10g025190 No alias Myb-like DNA-binding domain 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Predicted GO
MF GO:0004497 monooxygenase activity IEP Predicted GO
MF GO:0005215 transporter activity IEP Predicted GO
MF GO:0005506 iron ion binding IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0006952 defense response IEP Predicted GO
MF GO:0008168 methyltransferase activity IEP Predicted GO
MF GO:0008171 O-methyltransferase activity IEP Predicted GO
MF GO:0008194 UDP-glycosyltransferase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016491 oxidoreductase activity IEP Predicted GO
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP Predicted GO
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Predicted GO
MF GO:0020037 heme binding IEP Predicted GO
MF GO:0022857 transmembrane transporter activity IEP Predicted GO
MF GO:0035673 oligopeptide transmembrane transporter activity IEP Predicted GO
MF GO:0042887 amide transmembrane transporter activity IEP Predicted GO
MF GO:0043169 cation binding IEP Predicted GO
MF GO:0046872 metal ion binding IEP Predicted GO
MF GO:0046906 tetrapyrrole binding IEP Predicted GO
MF GO:0046914 transition metal ion binding IEP Predicted GO
MF GO:0048037 cofactor binding IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
MF GO:1904680 peptide transmembrane transporter activity IEP Predicted GO
InterPro domains Description Start Stop
IPR001005 SANT/Myb 69 113
IPR001005 SANT/Myb 15 62
No external refs found!