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  5. Sobic.004G312600.1

Sobic.004G312600.1


Description : component *(COP1) of COP1-SPA light signal transduction ubiquitin E3 ligase complex & component *(COP1) of substrate adaptor module of CUL4-based ubiquitin ligase complex


Gene families : OG_42_0000717 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G312600.1
Cluster HCAA Clusters: Cluster_143

Target Alias Description ECC score Gene Family Method Actions
101888 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
141846 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
171333 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
At1g53090 No alias SPA4 [Source:UniProtKB/TrEMBL;Acc:A0A178WBA0] 0.04 Orthogroups_2024-Update
At2g46340 No alias SPA1 [Source:UniProtKB/TrEMBL;Acc:A0A178VSM9] 0.04 Orthogroups_2024-Update
Bradi2g48657 No alias SPA1-related 4 0.05 Orthogroups_2024-Update
Bradi3g57667 No alias Transducin/WD40 repeat-like superfamily protein 0.04 Orthogroups_2024-Update
Brara.D01997.1 No alias Unknown function 0.04 Orthogroups_2024-Update
GRMZM2G061602 No alias SPA1-related 4 0.04 Orthogroups_2024-Update
GRMZM2G079904 No alias SPA1-related 4 0.03 Orthogroups_2024-Update
Glyma.05G214900 No alias SPA1-related 2 0.03 Orthogroups_2024-Update
Glyma.12G224600 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
Glyma.13G276700 No alias SPA1-related 3 0.04 Orthogroups_2024-Update
Glyma.14G049700 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Orthogroups_2024-Update
Glyma.16G027200 No alias SPA (suppressor of phyA-105) protein family 0.04 Orthogroups_2024-Update
HORVU1Hr1G090080.2 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.03 Orthogroups_2024-Update
HORVU3Hr1G068840.7 No alias component *(SPA) of substrate adaptor module of... 0.04 Orthogroups_2024-Update
HORVU6Hr1G079680.3 No alias component *(COP1) of COP1-SPA light signal transduction... 0.05 Orthogroups_2024-Update
LOC_Os02g53140 No alias COP1, putative, expressed 0.04 Orthogroups_2024-Update
LOC_Os05g49590 No alias suppressor of phythchrome A, putative, expressed 0.05 Orthogroups_2024-Update
Potri.001G399600 No alias SPA1-related 3 0.03 Orthogroups_2024-Update
Potri.014G159300 No alias Transducin/WD40 repeat-like superfamily protein 0.02 Orthogroups_2024-Update
Pp1s154_52V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Pp1s180_148V6 No alias ubiquitin ligase protein 0.05 Orthogroups_2024-Update
Pp1s30_295V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Pp1s81_234V6 No alias ubiquitin ligase protein 0.03 Orthogroups_2024-Update
Seita.1G334800.1 No alias component *(COP1) of COP1-SPA light signal transduction... 0.09 Orthogroups_2024-Update
Seita.3G139600.1 No alias regulatory component *(SPA) of COP1-SPA light signal... 0.07 Orthogroups_2024-Update
Seita.5G302800.1 No alias component *(SPA) of substrate adaptor module of... 0.08 Orthogroups_2024-Update
Solyc07g063120 No alias Ubiquitin ligase protein cop1, putative (AHRD V3.3 ***... 0.05 Orthogroups_2024-Update
Solyc12g005950 No alias COP1 homolog 0.04 Orthogroups_2024-Update
Solyc12g013840 No alias SPA1-related 3 (AHRD V3.3 *** AT3G15354.3) 0.02 Orthogroups_2024-Update
Sopen07g031310 No alias WD domain, G-beta repeat 0.06 Orthogroups_2024-Update
Sopen11g006790 No alias WD domain, G-beta repeat 0.03 Orthogroups_2024-Update
Sopen12g007160 No alias WD domain, G-beta repeat 0.02 Orthogroups_2024-Update
evm.model.tig00020964.35 No alias (at2g32950 : 280.0) Represses photomorphogenesis and... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA 16Dec
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Type GO Term Name Evidence Source
BP GO:0000272 polysaccharide catabolic process IEP Predicted GO
MF GO:0003774 motor activity IEP Predicted GO
MF GO:0003951 NAD+ kinase activity IEP Predicted GO
MF GO:0004356 glutamate-ammonia ligase activity IEP Predicted GO
BP GO:0006359 regulation of transcription by RNA polymerase III IEP Predicted GO
BP GO:0006536 glutamate metabolic process IEP Predicted GO
BP GO:0006537 glutamate biosynthetic process IEP Predicted GO
BP GO:0006541 glutamine metabolic process IEP Predicted GO
BP GO:0006542 glutamine biosynthetic process IEP Predicted GO
BP GO:0006739 NADP metabolic process IEP Predicted GO
BP GO:0006741 NADP biosynthetic process IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
BP GO:0008652 cellular amino acid biosynthetic process IEP Predicted GO
BP GO:0009064 glutamine family amino acid metabolic process IEP Predicted GO
BP GO:0009084 glutamine family amino acid biosynthetic process IEP Predicted GO
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Predicted GO
BP GO:0015672 monovalent inorganic cation transport IEP Predicted GO
MF GO:0015930 glutamate synthase activity IEP Predicted GO
MF GO:0016161 beta-amylase activity IEP Predicted GO
MF GO:0016211 ammonia ligase activity IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016480 negative regulation of transcription by RNA polymerase III IEP Predicted GO
MF GO:0016638 oxidoreductase activity, acting on the CH-NH2 group of donors IEP Predicted GO
MF GO:0016880 acid-ammonia (or amide) ligase activity IEP Predicted GO
BP GO:0017006 protein-tetrapyrrole linkage IEP Predicted GO
BP GO:0017007 protein-bilin linkage IEP Predicted GO
BP GO:0017009 protein-phycocyanobilin linkage IEP Predicted GO
BP GO:0030001 metal ion transport IEP Predicted GO
BP GO:0043648 dicarboxylic acid metabolic process IEP Predicted GO
BP GO:0043650 dicarboxylic acid biosynthetic process IEP Predicted GO
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Predicted GO
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Predicted GO
MF GO:0050664 oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor IEP Predicted GO
BP GO:0051253 negative regulation of RNA metabolic process IEP Predicted GO
BP GO:1901605 alpha-amino acid metabolic process IEP Predicted GO
BP GO:1901607 alpha-amino acid biosynthetic process IEP Predicted GO
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Predicted GO
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Predicted GO
MF GO:2001070 starch binding IEP Predicted GO
InterPro domains Description Start Stop
IPR001680 WD40_repeat 561 596
IPR001680 WD40_repeat 474 511
No external refs found!