At3g57230

Description : Agamous-like MADS-box protein AGL16 [Source:UniProtKB/Swiss-Prot;Acc:A2RVQ5]

Gene families : OG_42_0000009 (Orthogroups_2024-Update) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Arabidopsis release: At3g57230
Cluster	HCCA clusters: Cluster_112

Target	Alias	Description	ECC score	Gene Family Method
At3g02310	No alias	SEP2 [Source:UniProtKB/TrEMBL;Acc:A0A178V680]	0.04	Orthogroups_2024-Update
At3g66656	No alias	AGAMOUS-like 91 [Source:UniProtKB/TrEMBL;Acc:Q9C836]	0.04	Orthogroups_2024-Update
Bradi3g41297	No alias	AGAMOUS-like 14	0.02	Orthogroups_2024-Update
Brara.B03768.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.C00925.1	No alias	component *(PISTILLATA) of AP3-PISTILLATA organ-identity...	0.03	Orthogroups_2024-Update
Brara.D01347.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.D02757.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
Brara.I03965.1	No alias	Unknown function	0.03	Orthogroups_2024-Update
GRMZM2G018589	No alias	K-box region and MADS-box transcription factor family protein	0.02	Orthogroups_2024-Update
Glyma.08G310100	No alias	K-box region and MADS-box transcription factor family protein	0.03	Orthogroups_2024-Update
HORVU0Hr1G032300.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
HORVU1Hr1G047560.2	No alias	regulatory protein *(AP1/CAL/FUL) of floral meristem...	0.02	Orthogroups_2024-Update
HORVU6Hr1G066140.9	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.03	Orthogroups_2024-Update
HORVU7Hr1G054390.1	No alias	MADS/AGL-type transcription factor	0.03	Orthogroups_2024-Update
LOC_Os02g45770	No alias	OsMADS6 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g22760	No alias	OsMADS71 - MADS-box family gene with M-alpha type-box, expressed	0.02	Orthogroups_2024-Update
LOC_Os06g23950	No alias	OsMADS59 - MADS-box family gene with MIKCc type-box	0.04	Orthogroups_2024-Update
LOC_Os10g39130	No alias	OsMADS56 - MADS-box family gene with MIKCc type-box, expressed	0.02	Orthogroups_2024-Update
PSME_00050982-RA	No alias	(at4g11880 : 108.0) AGL12, AGL14, and AGL17 are all...	0.02	Orthogroups_2024-Update
Potri.009G084200	No alias	AGAMOUS-like 62	0.03	Orthogroups_2024-Update
Pp1s267_56V6	No alias	agamous-like protein	0.02	Orthogroups_2024-Update
Seita.1G273400.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.02	Orthogroups_2024-Update
Sobic.001G455900.1	No alias	regulatory protein *(SEPALLATA) of floral meristem...	0.04	Orthogroups_2024-Update
Solyc01g092950	No alias	MADS-box transcription factor (AHRD V3.3 *** A0A072TQ92_MEDTR)	0.03	Orthogroups_2024-Update
Solyc01g106170	No alias	AGAMOUS-like MADS-box transcription factor (AHRD V3.3...	0.03	Orthogroups_2024-Update
Sopen03g033910	No alias	K-box region	0.03	Orthogroups_2024-Update
Sopen12g029050	No alias	SRF-type transcription factor (DNA-binding and...	0.03	Orthogroups_2024-Update
evm.model.contig_454.6	No alias	(at3g57230 : 92.4) MADS-box transcription factor....	0.02	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	InterProScan predictions
MF	GO:0003700	DNA-binding transcription factor activity	IEA	InterProScan predictions
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	InterProScan predictions
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	InterProScan predictions
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	InterProScan predictions
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005516	calmodulin binding	IEP	Predicted GO
MF	GO:0043565	sequence-specific DNA binding	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR002100	TF_MADSbox	10	57
IPR002487	TF_Kbox	83	170

External Links

No external refs found!

At3g57230

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation