1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.004G357100.1

Sobic.004G357100.1


Description : scaffold component *(FRY) of RAM signalling pathway


Gene families : OG_42_0005119 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0005119_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.004G357100.1
Cluster HCAA Clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
84835 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
At5g15680 No alias ARM repeat superfamily protein... 0.03 Orthogroups_2024-Update
Bradi3g60610 No alias ARM repeat superfamily protein 0.06 Orthogroups_2024-Update
Glyma.11G061700 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Glyma.19G037200 No alias ARM repeat superfamily protein 0.02 Orthogroups_2024-Update
Kfl00564_0040 kfl00564_0040_v1.1 (at5g15680 : 1628.0) ARM repeat superfamily protein;... 0.02 Orthogroups_2024-Update
Seita.1G378100.1 No alias scaffold component *(FRY) of RAM signalling pathway 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Predicted GO
MF GO:0003682 chromatin binding IEP Predicted GO
MF GO:0004386 helicase activity IEP Predicted GO
MF GO:0004518 nuclease activity IEP Predicted GO
MF GO:0004527 exonuclease activity IEP Predicted GO
MF GO:0005488 binding IEP Predicted GO
CC GO:0005643 nuclear pore IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006479 protein methylation IEP Predicted GO
BP GO:0006606 protein import into nucleus IEP Predicted GO
BP GO:0006913 nucleocytoplasmic transport IEP Predicted GO
BP GO:0008213 protein alkylation IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016278 lysine N-methyltransferase activity IEP Predicted GO
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0016571 histone methylation IEP Predicted GO
BP GO:0017038 protein import IEP Predicted GO
BP GO:0018022 peptidyl-lysine methylation IEP Predicted GO
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Predicted GO
BP GO:0018205 peptidyl-lysine modification IEP Predicted GO
BP GO:0033365 protein localization to organelle IEP Predicted GO
BP GO:0034504 protein localization to nucleus IEP Predicted GO
BP GO:0034613 cellular protein localization IEP Predicted GO
BP GO:0034968 histone lysine methylation IEP Predicted GO
MF GO:0042054 histone methyltransferase activity IEP Predicted GO
BP GO:0046907 intracellular transport IEP Predicted GO
BP GO:0051169 nuclear transport IEP Predicted GO
BP GO:0051170 import into nucleus IEP Predicted GO
BP GO:0051641 cellular localization IEP Predicted GO
BP GO:0051649 establishment of localization in cell IEP Predicted GO
BP GO:0070727 cellular macromolecule localization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0072594 establishment of protein localization to organelle IEP Predicted GO
InterPro domains Description Start Stop
IPR029473 MOR2-PAG1_mid 625 1737
IPR025481 Cell_Morphogen_C 1762 2049
IPR025614 Cell_morpho_N 85 587
No external refs found!