Description : cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6)
Gene families : OG_42_0008004 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0008004_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | Sorghum bicolor: Sobic.005G009300.1 | |
Cluster | HCAA Clusters: Cluster_129 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Bradi4g44660 | No alias | plastid transcriptionally active 6 | 0.04 | Orthogroups_2024-Update | |
Pp1s200_101V6 | No alias | PREDICTED: hypothetical protein [Vitis vinifera] | 0.02 | Orthogroups_2024-Update | |
Seita.8G016200.1 | No alias | cofactor of plastid-encoded RNA polymerase *(PAP8/TAC6) | 0.07 | Orthogroups_2024-Update | |
Sopen04g025710 | No alias | hypothetical protein | 0.04 | Orthogroups_2024-Update |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003674 | molecular_function | IEP | Predicted GO |
MF | GO:0003723 | RNA binding | IEP | Predicted GO |
MF | GO:0003824 | catalytic activity | IEP | Predicted GO |
MF | GO:0003849 | 3-deoxy-7-phosphoheptulonate synthase activity | IEP | Predicted GO |
MF | GO:0003909 | DNA ligase activity | IEP | Predicted GO |
MF | GO:0003910 | DNA ligase (ATP) activity | IEP | Predicted GO |
MF | GO:0003968 | RNA-directed 5'-3' RNA polymerase activity | IEP | Predicted GO |
MF | GO:0004000 | adenosine deaminase activity | IEP | Predicted GO |
MF | GO:0004177 | aminopeptidase activity | IEP | Predicted GO |
MF | GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity | IEP | Predicted GO |
MF | GO:0004834 | tryptophan synthase activity | IEP | Predicted GO |
MF | GO:0005092 | GDP-dissociation inhibitor activity | IEP | Predicted GO |
MF | GO:0005094 | Rho GDP-dissociation inhibitor activity | IEP | Predicted GO |
MF | GO:0005488 | binding | IEP | Predicted GO |
BP | GO:0006081 | cellular aldehyde metabolic process | IEP | Predicted GO |
BP | GO:0006082 | organic acid metabolic process | IEP | Predicted GO |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
BP | GO:0006351 | transcription, DNA-templated | IEP | Predicted GO |
BP | GO:0006396 | RNA processing | IEP | Predicted GO |
BP | GO:0006399 | tRNA metabolic process | IEP | Predicted GO |
BP | GO:0006520 | cellular amino acid metabolic process | IEP | Predicted GO |
BP | GO:0006568 | tryptophan metabolic process | IEP | Predicted GO |
BP | GO:0006576 | cellular biogenic amine metabolic process | IEP | Predicted GO |
BP | GO:0006586 | indolalkylamine metabolic process | IEP | Predicted GO |
BP | GO:0006644 | phospholipid metabolic process | IEP | Predicted GO |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
BP | GO:0006808 | regulation of nitrogen utilization | IEP | Predicted GO |
BP | GO:0007264 | small GTPase mediated signal transduction | IEP | Predicted GO |
BP | GO:0007265 | Ras protein signal transduction | IEP | Predicted GO |
BP | GO:0007266 | Rho protein signal transduction | IEP | Predicted GO |
BP | GO:0008033 | tRNA processing | IEP | Predicted GO |
MF | GO:0008168 | methyltransferase activity | IEP | Predicted GO |
MF | GO:0008175 | tRNA methyltransferase activity | IEP | Predicted GO |
MF | GO:0008483 | transaminase activity | IEP | Predicted GO |
BP | GO:0009072 | aromatic amino acid family metabolic process | IEP | Predicted GO |
BP | GO:0009240 | isopentenyl diphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0016070 | RNA metabolic process | IEP | Predicted GO |
MF | GO:0016423 | tRNA (guanine) methyltransferase activity | IEP | Predicted GO |
MF | GO:0016725 | oxidoreductase activity, acting on CH or CH2 groups | IEP | Predicted GO |
MF | GO:0016726 | oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor | IEP | Predicted GO |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Predicted GO |
MF | GO:0016769 | transferase activity, transferring nitrogenous groups | IEP | Predicted GO |
MF | GO:0016779 | nucleotidyltransferase activity | IEP | Predicted GO |
MF | GO:0016814 | hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines | IEP | Predicted GO |
MF | GO:0016874 | ligase activity | IEP | Predicted GO |
MF | GO:0016881 | acid-amino acid ligase activity | IEP | Predicted GO |
MF | GO:0016886 | ligase activity, forming phosphoric ester bonds | IEP | Predicted GO |
MF | GO:0019239 | deaminase activity | IEP | Predicted GO |
BP | GO:0019288 | isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway | IEP | Predicted GO |
BP | GO:0019682 | glyceraldehyde-3-phosphate metabolic process | IEP | Predicted GO |
BP | GO:0019752 | carboxylic acid metabolic process | IEP | Predicted GO |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | Predicted GO |
BP | GO:0034470 | ncRNA processing | IEP | Predicted GO |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Predicted GO |
BP | GO:0034660 | ncRNA metabolic process | IEP | Predicted GO |
BP | GO:0042430 | indole-containing compound metabolic process | IEP | Predicted GO |
MF | GO:0043021 | ribonucleoprotein complex binding | IEP | Predicted GO |
MF | GO:0043022 | ribosome binding | IEP | Predicted GO |
BP | GO:0043436 | oxoacid metabolic process | IEP | Predicted GO |
BP | GO:0044106 | cellular amine metabolic process | IEP | Predicted GO |
BP | GO:0044281 | small molecule metabolic process | IEP | Predicted GO |
BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
BP | GO:0046490 | isopentenyl diphosphate metabolic process | IEP | Predicted GO |
MF | GO:0050661 | NADP binding | IEP | Predicted GO |
BP | GO:0050992 | dimethylallyl diphosphate biosynthetic process | IEP | Predicted GO |
BP | GO:0050993 | dimethylallyl diphosphate metabolic process | IEP | Predicted GO |
MF | GO:0051745 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity | IEP | Predicted GO |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Predicted GO |
MF | GO:0097747 | RNA polymerase activity | IEP | Predicted GO |
MF | GO:0140098 | catalytic activity, acting on RNA | IEP | Predicted GO |
MF | GO:0140101 | catalytic activity, acting on a tRNA | IEP | Predicted GO |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
No InterPro domains available for this sequence
No external refs found! |