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  5. Sobic.005G012600.1

Sobic.005G012600.1


Description : Unknown function


Gene families : OG_42_0000142 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G012600.1
Cluster HCAA Clusters: Cluster_205

Target Alias Description ECC score Gene Family Method Actions
A4A49_21859 No alias non-specific lipid-transfer protein 0.03 Orthogroups_2024-Update
A4A49_54421 No alias non-specific lipid-transfer protein 0.05 Orthogroups_2024-Update
Bradi1g39120 No alias Bifunctional inhibitor/lipid-transfer protein/seed... 0.03 Orthogroups_2024-Update
GRMZM2G107839 No alias lipid transfer protein 3 0.03 Orthogroups_2024-Update
Glyma.01G130100 No alias lipid transfer protein 1 0.03 Orthogroups_2024-Update
HORVU2Hr1G107480.1 No alias Unknown function 0.02 Orthogroups_2024-Update
HORVU3Hr1G009320.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Potri.011G021900 No alias lipid transfer protein 12 0.04 Orthogroups_2024-Update
Solyc08g067540 No alias Non-specific lipid-transfer protein (AHRD V3.3 *** K4CLY0_SOLLC) 0.02 Orthogroups_2024-Update
Solyc10g075090 No alias Non-specific lipid-transfer protein (AHRD V3.3 *** Q4A1N0_SOLLC) 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
BP GO:0006259 DNA metabolic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006284 base-excision repair IEP Predicted GO
BP GO:0006813 potassium ion transport IEP Predicted GO
MF GO:0008234 cysteine-type peptidase activity IEP Predicted GO
MF GO:0008374 O-acyltransferase activity IEP Predicted GO
MF GO:0015079 potassium ion transmembrane transporter activity IEP Predicted GO
MF GO:0016746 transferase activity, transferring acyl groups IEP Predicted GO
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071103 DNA conformation change IEP Predicted GO
BP GO:0071805 potassium ion transmembrane transport IEP Predicted GO
InterPro domains Description Start Stop
IPR016140 Bifunc_inhib/LTP/seed_store 31 112
No external refs found!