Sobic.005G019700.1

Description : component *(uS9) of small ribosomal-subunit (SSU) proteome

Gene families : OG_42_0002098 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0002098_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor: Sobic.005G019700.1
Cluster	HCAA Clusters: Cluster_124

Target	Alias	Description	ECC score	Gene Family Method
138369	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.3	Orthogroups_2024-Update
A4A49_19998	No alias	40s ribosomal protein s16	0.12	Orthogroups_2024-Update
A4A49_23464	No alias	40s ribosomal protein s16	0.09	Orthogroups_2024-Update
A4A49_46097	No alias	40s ribosomal protein s16	0.14	Orthogroups_2024-Update
Brara.A03778.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
Brara.C00820.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.28	Orthogroups_2024-Update
Brara.C03046.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.4	Orthogroups_2024-Update
Brara.E03459.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.31	Orthogroups_2024-Update
Brara.J01727.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.3	Orthogroups_2024-Update
Cre13.g573351	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.12	Orthogroups_2024-Update
GRMZM2G353103	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.13	Orthogroups_2024-Update
GRMZM2G377797	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.09	Orthogroups_2024-Update
GRMZM2G427014	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.13	Orthogroups_2024-Update
Glyma.02G103600	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.14	Orthogroups_2024-Update
Glyma.05G241200	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.16	Orthogroups_2024-Update
Glyma.07G214900	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.02	Orthogroups_2024-Update
Glyma.08G048200	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.17	Orthogroups_2024-Update
HORVU4Hr1G023530.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.13	Orthogroups_2024-Update
HORVU4Hr1G023570.2	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.19	Orthogroups_2024-Update
HORVU5Hr1G045620.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.15	Orthogroups_2024-Update
Kfl00461_0050	kfl00461_0050_v1.1	(p46293\|rs16_goshi : 254.0) 40S ribosomal protein S16 -...	0.08	Orthogroups_2024-Update
LOC_Os12g03090	No alias	ribosomal protein, putative, expressed	0.07	Orthogroups_2024-Update
Mp1g07720.1	No alias	component RPS16 of SSU proteome	0.06	Orthogroups_2024-Update
Mp1g14290.1	No alias	component RPS16 of SSU proteome	0.18	Orthogroups_2024-Update
Potri.001G304700	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.12	Orthogroups_2024-Update
Potri.008G150000	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.04	Orthogroups_2024-Update
Potri.010G091000	No alias	Ribosomal protein S5 domain 2-like superfamily protein	0.03	Orthogroups_2024-Update
Pp1s17_377V6	No alias	40s ribosomal protein s16	0.19	Orthogroups_2024-Update
Pp1s199_17V6	No alias	40s ribosomal protein s16	0.08	Orthogroups_2024-Update
Pp1s225_61V6	No alias	40s ribosomal protein s16	0.05	Orthogroups_2024-Update
Pp1s228_28V6	No alias	40s ribosomal protein s16	0.1	Orthogroups_2024-Update
Pp1s290_44V6	No alias	40s ribosomal protein s16	0.09	Orthogroups_2024-Update
Seita.7G306900.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.27	Orthogroups_2024-Update
Seita.8G007700.1	No alias	component *(uS9) of small ribosomal-subunit (SSU) proteome	0.04	Orthogroups_2024-Update
Solyc01g068530	No alias	Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR)	0.12	Orthogroups_2024-Update
Solyc04g026100	No alias	Ribosomal protein S16 (AHRD V3.3 *** A9P8S1_POPTR)	0.16	Orthogroups_2024-Update
Solyc05g005690	No alias	Ribosomal protein S9, putative (AHRD V3.3 *** B9RYF4_RICCO)	0.11	Orthogroups_2024-Update
Sopen01g030490	No alias	Ribosomal protein S9/S16	0.08	Orthogroups_2024-Update
Sopen04g014030	No alias	Ribosomal protein S9/S16	0.2	Orthogroups_2024-Update
Sopen05g001690	No alias	Ribosomal protein S9/S16	0.03	Orthogroups_2024-Update
evm.model.contig_435.17	No alias	(at2g09990 : 160.0) Ribosomal protein S5 domain 2-like...	0.42	Orthogroups_2024-Update
evm.model.tig00000123.14	No alias	(at2g09990 : 175.0) Ribosomal protein S5 domain 2-like...	0.26	Orthogroups_2024-Update

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	16Dec
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	16Dec
BP	GO:0006412	translation	IEA	16Dec
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001882	nucleoside binding	IEP	Predicted GO
MF	GO:0001883	purine nucleoside binding	IEP	Predicted GO
MF	GO:0003676	nucleic acid binding	IEP	Predicted GO
MF	GO:0003723	RNA binding	IEP	Predicted GO
MF	GO:0003746	translation elongation factor activity	IEP	Predicted GO
MF	GO:0003924	GTPase activity	IEP	Predicted GO
MF	GO:0005525	GTP binding	IEP	Predicted GO
BP	GO:0006414	translational elongation	IEP	Predicted GO
MF	GO:0008097	5S rRNA binding	IEP	Predicted GO
MF	GO:0008135	translation factor activity, RNA binding	IEP	Predicted GO
CC	GO:0015934	large ribosomal subunit	IEP	Predicted GO
MF	GO:0016462	pyrophosphatase activity	IEP	Predicted GO
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Predicted GO
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Predicted GO
MF	GO:0017111	nucleoside-triphosphatase activity	IEP	Predicted GO
MF	GO:0019001	guanyl nucleotide binding	IEP	Predicted GO
MF	GO:0019843	rRNA binding	IEP	Predicted GO
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Predicted GO
MF	GO:0030515	snoRNA binding	IEP	Predicted GO
MF	GO:0032549	ribonucleoside binding	IEP	Predicted GO
MF	GO:0032550	purine ribonucleoside binding	IEP	Predicted GO
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Predicted GO
BP	GO:0042254	ribosome biogenesis	IEP	Predicted GO
CC	GO:0044391	ribosomal subunit	IEP	Predicted GO

InterPro domains	Description	Start	Stop
IPR000754	Ribosomal_S9	16	148

External Links

No external refs found!

Sobic.005G019700.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation