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Description : Unknown function
Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor: Sobic.005G024600.1 | |
| Cluster | HCAA Clusters: Cluster_17 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| Bradi1g14190 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.05 | Orthogroups_2024-Update | |
| Bradi2g38400 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi2g38440 | No alias | Pentatricopeptide repeat (PPR) superfamily protein | 0.03 | Orthogroups_2024-Update | |
| Bradi3g18572 | No alias | Tetratricopeptide repeat (TPR)-like superfamily protein | 0.03 | Orthogroups_2024-Update | |
| HORVU1Hr1G013810.1 | No alias | Unknown function | 0.03 | Orthogroups_2024-Update | |
| LOC_Os08g01650 | No alias | Rf1, mitochondrial precursor, putative, expressed | 0.03 | Orthogroups_2024-Update | |
| Seita.7G058000.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Seita.7G058100.1 | No alias | Unknown function | 0.06 | Orthogroups_2024-Update | |
| Seita.8G161400.1 | No alias | Unknown function | 0.07 | Orthogroups_2024-Update | |
| Seita.8G167800.1 | No alias | Unknown function | 0.05 | Orthogroups_2024-Update | |
| Seita.9G204800.1 | No alias | Unknown function | 0.04 | Orthogroups_2024-Update | |
| Sobic.002G054200.1 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update | |
| Sobic.005G027600.2 | No alias | Unknown function | 0.02 | Orthogroups_2024-Update |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000075 | cell cycle checkpoint | IEP | Predicted GO |
| BP | GO:0000077 | DNA damage checkpoint | IEP | Predicted GO |
| BP | GO:0000725 | recombinational repair | IEP | Predicted GO |
| CC | GO:0000786 | nucleosome | IEP | Predicted GO |
| MF | GO:0003690 | double-stranded DNA binding | IEP | Predicted GO |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | Predicted GO |
| MF | GO:0004176 | ATP-dependent peptidase activity | IEP | Predicted GO |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Predicted GO |
| BP | GO:0006259 | DNA metabolic process | IEP | Predicted GO |
| BP | GO:0006265 | DNA topological change | IEP | Predicted GO |
| BP | GO:0006281 | DNA repair | IEP | Predicted GO |
| BP | GO:0006298 | mismatch repair | IEP | Predicted GO |
| BP | GO:0006310 | DNA recombination | IEP | Predicted GO |
| BP | GO:0006400 | tRNA modification | IEP | Predicted GO |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Predicted GO |
| BP | GO:0006950 | response to stress | IEP | Predicted GO |
| BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | Predicted GO |
| MF | GO:0008270 | zinc ion binding | IEP | Predicted GO |
| MF | GO:0016597 | amino acid binding | IEP | Predicted GO |
| MF | GO:0016743 | carboxyl- or carbamoyltransferase activity | IEP | Predicted GO |
| MF | GO:0016763 | transferase activity, transferring pentosyl groups | IEP | Predicted GO |
| MF | GO:0030983 | mismatched DNA binding | IEP | Predicted GO |
| MF | GO:0031406 | carboxylic acid binding | IEP | Predicted GO |
| BP | GO:0031570 | DNA integrity checkpoint | IEP | Predicted GO |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | Predicted GO |
| CC | GO:0032993 | protein-DNA complex | IEP | Predicted GO |
| BP | GO:0033554 | cellular response to stress | IEP | Predicted GO |
| MF | GO:0043167 | ion binding | IEP | Predicted GO |
| MF | GO:0043169 | cation binding | IEP | Predicted GO |
| MF | GO:0043177 | organic acid binding | IEP | Predicted GO |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | Predicted GO |
| CC | GO:0044815 | DNA packaging complex | IEP | Predicted GO |
| BP | GO:0045786 | negative regulation of cell cycle | IEP | Predicted GO |
| BP | GO:0046483 | heterocycle metabolic process | IEP | Predicted GO |
| MF | GO:0046872 | metal ion binding | IEP | Predicted GO |
| MF | GO:0046914 | transition metal ion binding | IEP | Predicted GO |
| BP | GO:0051716 | cellular response to stimulus | IEP | Predicted GO |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | Predicted GO |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Predicted GO |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002885 | Pentatricopeptide_repeat | 92 | 116 |
| IPR002885 | Pentatricopeptide_repeat | 129 | 148 |
| IPR002885 | Pentatricopeptide_repeat | 341 | 366 |
| IPR002885 | Pentatricopeptide_repeat | 624 | 671 |
| IPR002885 | Pentatricopeptide_repeat | 553 | 601 |
| IPR002885 | Pentatricopeptide_repeat | 267 | 316 |
| IPR002885 | Pentatricopeptide_repeat | 197 | 246 |
| IPR002885 | Pentatricopeptide_repeat | 378 | 427 |
| IPR002885 | Pentatricopeptide_repeat | 483 | 531 |
| IPR002885 | Pentatricopeptide_repeat | 444 | 476 |
| IPR002885 | Pentatricopeptide_repeat | 156 | 187 |
| IPR002885 | Pentatricopeptide_repeat | 688 | 738 |
| No external refs found! |