1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.005G026200.1

Sobic.005G026200.1


Description : proteasome assembly quality control factor *(ECM29)


Gene families : OG_42_0007416 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0007416_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G026200.1
Cluster HCAA Clusters: Cluster_224

Target Alias Description ECC score Gene Family Method Actions
Bradi4g43517 No alias ARM repeat superfamily protein 0.03 Orthogroups_2024-Update
Glyma.14G036800 No alias ARM repeat superfamily protein 0.05 Orthogroups_2024-Update
Mp7g14700.1 No alias no hits & (original description: none) 0.04 Orthogroups_2024-Update
PSME_00008174-RA No alias (at2g26780 : 755.0) ARM repeat superfamily protein;... 0.04 Orthogroups_2024-Update
Pp1s21_271V6 No alias heat repeat family expressed 0.02 Orthogroups_2024-Update
Seita.7G314600.1 No alias proteasome assembly quality control factor *(ECM29) 0.03 Orthogroups_2024-Update
evm.model.tig00021073.37 No alias (at2g26780 : 362.0) ARM repeat superfamily protein;... 0.01 Orthogroups_2024-Update

Type GO Term Name Evidence Source
BP GO:0043248 proteasome assembly IEA 16Dec
MF GO:0060090 molecular adaptor activity IEA 16Dec
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003684 damaged DNA binding IEP Predicted GO
MF GO:0003725 double-stranded RNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0003916 DNA topoisomerase activity IEP Predicted GO
MF GO:0003917 DNA topoisomerase type I activity IEP Predicted GO
MF GO:0003924 GTPase activity IEP Predicted GO
MF GO:0004470 malic enzyme activity IEP Predicted GO
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Predicted GO
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Predicted GO
MF GO:0004650 polygalacturonase activity IEP Predicted GO
MF GO:0004730 pseudouridylate synthase activity IEP Predicted GO
BP GO:0005975 carbohydrate metabolic process IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006265 DNA topological change IEP Predicted GO
BP GO:0006289 nucleotide-excision repair IEP Predicted GO
BP GO:0006771 riboflavin metabolic process IEP Predicted GO
BP GO:0007186 G protein-coupled receptor signaling pathway IEP Predicted GO
MF GO:0008686 3,4-dihydroxy-2-butanone-4-phosphate synthase activity IEP Predicted GO
BP GO:0009231 riboflavin biosynthetic process IEP Predicted GO
BP GO:0010498 proteasomal protein catabolic process IEP Predicted GO
MF GO:0016615 malate dehydrogenase activity IEP Predicted GO
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Predicted GO
MF GO:0016787 hydrolase activity IEP Predicted GO
MF GO:0016791 phosphatase activity IEP Predicted GO
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Predicted GO
MF GO:0019001 guanyl nucleotide binding IEP Predicted GO
BP GO:0019321 pentose metabolic process IEP Predicted GO
BP GO:0019566 arabinose metabolic process IEP Predicted GO
BP GO:0030163 protein catabolic process IEP Predicted GO
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Predicted GO
MF GO:0042578 phosphoric ester hydrolase activity IEP Predicted GO
BP GO:0042726 flavin-containing compound metabolic process IEP Predicted GO
BP GO:0042727 flavin-containing compound biosynthetic process IEP Predicted GO
BP GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IEP Predicted GO
BP GO:0046373 L-arabinose metabolic process IEP Predicted GO
MF GO:0046556 alpha-L-arabinofuranosidase activity IEP Predicted GO
MF GO:0050660 flavin adenine dinucleotide binding IEP Predicted GO
MF GO:0070569 uridylyltransferase activity IEP Predicted GO
InterPro domains Description Start Stop
IPR024372 Ecm29 28 509
No external refs found!