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  5. Sobic.005G027600.2

Sobic.005G027600.2


Description : Unknown function


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G027600.2
Cluster HCAA Clusters: Cluster_89

Target Alias Description ECC score Gene Family Method Actions
Bradi1g14190 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Orthogroups_2024-Update
Bradi2g38453 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
GRMZM2G416201 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
HORVU1Hr1G013810.1 No alias Unknown function 0.03 Orthogroups_2024-Update
HORVU1Hr1G014030.2 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.5G061100.1 No alias Unknown function 0.03 Orthogroups_2024-Update
Seita.7G058000.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.8G167800.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.8G169000.1 No alias Unknown function 0.06 Orthogroups_2024-Update
Seita.9G204600.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Seita.9G204800.1 No alias Unknown function 0.04 Orthogroups_2024-Update
Sobic.005G024600.1 No alias Unknown function 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Predicted GO
MF GO:0004672 protein kinase activity IEP Predicted GO
MF GO:0004673 protein histidine kinase activity IEP Predicted GO
MF GO:0016301 kinase activity IEP Predicted GO
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Predicted GO
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Predicted GO
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Predicted GO
MF GO:0030599 pectinesterase activity IEP Predicted GO
BP GO:0042545 cell wall modification IEP Predicted GO
BP GO:0045229 external encapsulating structure organization IEP Predicted GO
MF GO:0052689 carboxylic ester hydrolase activity IEP Predicted GO
BP GO:0071554 cell wall organization or biogenesis IEP Predicted GO
BP GO:0071555 cell wall organization IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 11 60
IPR002885 Pentatricopeptide_repeat 326 375
IPR002885 Pentatricopeptide_repeat 186 235
IPR002885 Pentatricopeptide_repeat 396 445
IPR002885 Pentatricopeptide_repeat 85 130
IPR002885 Pentatricopeptide_repeat 467 508
IPR002885 Pentatricopeptide_repeat 253 284
IPR002885 Pentatricopeptide_repeat 288 320
IPR002885 Pentatricopeptide_repeat 154 184
No external refs found!