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  5. Sobic.005G028200.2

Sobic.005G028200.2


Description : Unknown function


Gene families : OG_42_0000929 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000929_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G028200.2
Cluster HCAA Clusters: Cluster_113

Target Alias Description ECC score Gene Family Method Actions
Bradi2g38440 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Orthogroups_2024-Update
GRMZM2G431850 No alias rna processing factor 2 0.03 Orthogroups_2024-Update
LOC_Os08g01650 No alias Rf1, mitochondrial precursor, putative, expressed 0.02 Orthogroups_2024-Update
Seita.7G058100.1 No alias Unknown function 0.02 Orthogroups_2024-Update
Seita.8G161400.1 No alias Unknown function 0.04 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Predicted GO
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Predicted GO
BP GO:0005996 monosaccharide metabolic process IEP Predicted GO
BP GO:0006006 glucose metabolic process IEP Predicted GO
BP GO:0006094 gluconeogenesis IEP Predicted GO
MF GO:0008270 zinc ion binding IEP Predicted GO
MF GO:0016831 carboxy-lyase activity IEP Predicted GO
BP GO:0019318 hexose metabolic process IEP Predicted GO
BP GO:0019319 hexose biosynthetic process IEP Predicted GO
BP GO:0046364 monosaccharide biosynthetic process IEP Predicted GO
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 335 384
IPR002885 Pentatricopeptide_repeat 120 169
IPR002885 Pentatricopeptide_repeat 405 454
IPR002885 Pentatricopeptide_repeat 194 244
IPR002885 Pentatricopeptide_repeat 465 518
IPR002885 Pentatricopeptide_repeat 9 36
IPR002885 Pentatricopeptide_repeat 297 328
IPR002885 Pentatricopeptide_repeat 79 110
No external refs found!