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  5. Sobic.005G041400.2

Sobic.005G041400.2


Description : RAV/NGATHA-type transcription factor


Gene families : OG_42_0000305 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0000305_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G041400.2
Cluster HCAA Clusters: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
At5g06250 No alias AP2/B3-like transcriptional factor family protein... 0.03 Orthogroups_2024-Update
Bradi2g17610 No alias ethylene response DNA binding factor 3 0.03 Orthogroups_2024-Update
Brara.E00098.1 No alias RAV/NGATHA-type transcription factor 0.02 Orthogroups_2024-Update
Glyma.03G262200 No alias AP2/B3-like transcriptional factor family protein 0.03 Orthogroups_2024-Update
HORVU1Hr1G082670.6 No alias RAV/NGATHA-type transcription factor & AP2-RAV-type... 0.03 Orthogroups_2024-Update
HORVU4Hr1G021650.14 No alias RAV/NGATHA-type transcription factor 0.03 Orthogroups_2024-Update
MA_10433425g0010 No alias (at1g25560 : 91.3) Encodes a member of the RAV... 0.03 Orthogroups_2024-Update
PSME_00057154-RA No alias (at1g13260 : 282.0) Encodes an AP2/B3 domain... 0.02 Orthogroups_2024-Update
Sopen10g032690 No alias B3 DNA binding domain 0.03 Orthogroups_2024-Update

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA 16Dec
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Type GO Term Name Evidence Source
MF GO:0004180 carboxypeptidase activity IEP Predicted GO
MF GO:0004185 serine-type carboxypeptidase activity IEP Predicted GO
CC GO:0005956 protein kinase CK2 complex IEP Predicted GO
BP GO:0006508 proteolysis IEP Predicted GO
BP GO:0006835 dicarboxylic acid transport IEP Predicted GO
MF GO:0008233 peptidase activity IEP Predicted GO
MF GO:0008236 serine-type peptidase activity IEP Predicted GO
MF GO:0008238 exopeptidase activity IEP Predicted GO
BP GO:0015711 organic anion transport IEP Predicted GO
BP GO:0015740 C4-dicarboxylate transport IEP Predicted GO
BP GO:0015743 malate transport IEP Predicted GO
BP GO:0015849 organic acid transport IEP Predicted GO
MF GO:0017171 serine hydrolase activity IEP Predicted GO
MF GO:0019207 kinase regulator activity IEP Predicted GO
MF GO:0019887 protein kinase regulator activity IEP Predicted GO
BP GO:0046942 carboxylic acid transport IEP Predicted GO
MF GO:0070008 serine-type exopeptidase activity IEP Predicted GO
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Predicted GO
InterPro domains Description Start Stop
IPR003340 B3_DNA-bd 36 135
No external refs found!