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  5. Sobic.005G079800.1

Sobic.005G079800.1


Description : adapter component *(SEU/SLK) of transcriptional co-repressor complex


Gene families : OG_42_0001027 (Orthogroups_2024-Update) Phylogenetic Tree(s): OG0001027_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor: Sobic.005G079800.1
Cluster HCAA Clusters: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
405025 No alias SEUSS transcriptional co-regulator 0.03 Orthogroups_2024-Update
437711 No alias SEUSS transcriptional co-regulator 0.02 Orthogroups_2024-Update
At1g43850 No alias Transcriptional corepressor SEUSS... 0.03 Orthogroups_2024-Update
At4g25520 No alias Probable transcriptional regulator SLK1... 0.03 Orthogroups_2024-Update
At5g62090 No alias Probable transcriptional regulator SLK2... 0.02 Orthogroups_2024-Update
Bradi1g49497 No alias SEUSS-like 3 0.02 Orthogroups_2024-Update
Bradi2g26970 No alias SEUSS transcriptional co-regulator 0.03 Orthogroups_2024-Update
Bradi4g22770 No alias SEUSS transcriptional co-regulator 0.04 Orthogroups_2024-Update
Glyma.04G241900 No alias SEUSS transcriptional co-regulator 0.02 Orthogroups_2024-Update
Glyma.06G121500 No alias SEUSS transcriptional co-regulator 0.04 Orthogroups_2024-Update
Glyma.09G146200 No alias SEUSS-like 2 0.03 Orthogroups_2024-Update
Glyma.13G037600 No alias SEUSS transcriptional co-regulator 0.03 Orthogroups_2024-Update
Glyma.14G119800 No alias SEUSS transcriptional co-regulator 0.03 Orthogroups_2024-Update
MA_33392g0010 No alias (at5g62090 : 131.0) SEUSS-like 2 (SLK2); BEST... 0.03 Orthogroups_2024-Update
PSME_00036824-RA No alias (at5g62090 : 384.0) SEUSS-like 2 (SLK2); BEST... 0.02 Orthogroups_2024-Update
Seita.4G015400.1 No alias adapter component *(SEU/SLK) of transcriptional... 0.03 Orthogroups_2024-Update
Sopen03g005060 No alias LIM-domain binding protein 0.02 Orthogroups_2024-Update

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Predicted GO
MF GO:0003677 DNA binding IEP Predicted GO
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Predicted GO
MF GO:0004842 ubiquitin-protein transferase activity IEP Predicted GO
CC GO:0005694 chromosome IEP Predicted GO
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Predicted GO
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Predicted GO
BP GO:0006325 chromatin organization IEP Predicted GO
BP GO:0006338 chromatin remodeling IEP Predicted GO
BP GO:0006354 DNA-templated transcription, elongation IEP Predicted GO
BP GO:0006368 transcription elongation from RNA polymerase II promoter IEP Predicted GO
BP GO:0006476 protein deacetylation IEP Predicted GO
BP GO:0006996 organelle organization IEP Predicted GO
CC GO:0008023 transcription elongation factor complex IEP Predicted GO
BP GO:0016043 cellular component organization IEP Predicted GO
MF GO:0016151 nickel cation binding IEP Predicted GO
BP GO:0016255 attachment of GPI anchor to protein IEP Predicted GO
CC GO:0016459 myosin complex IEP Predicted GO
BP GO:0016569 covalent chromatin modification IEP Predicted GO
BP GO:0016570 histone modification IEP Predicted GO
BP GO:0016575 histone deacetylation IEP Predicted GO
CC GO:0016593 Cdc73/Paf1 complex IEP Predicted GO
BP GO:0019627 urea metabolic process IEP Predicted GO
MF GO:0019787 ubiquitin-like protein transferase activity IEP Predicted GO
MF GO:0031625 ubiquitin protein ligase binding IEP Predicted GO
BP GO:0032774 RNA biosynthetic process IEP Predicted GO
CC GO:0032991 protein-containing complex IEP Predicted GO
CC GO:0035550 urease complex IEP Predicted GO
BP GO:0035601 protein deacylation IEP Predicted GO
CC GO:0042765 GPI-anchor transamidase complex IEP Predicted GO
BP GO:0043419 urea catabolic process IEP Predicted GO
BP GO:0043605 cellular amide catabolic process IEP Predicted GO
BP GO:0044282 small molecule catabolic process IEP Predicted GO
MF GO:0044389 ubiquitin-like protein ligase binding IEP Predicted GO
CC GO:0044422 organelle part IEP Predicted GO
CC GO:0044424 intracellular part IEP Predicted GO
CC GO:0044425 membrane part IEP Predicted GO
CC GO:0044446 intracellular organelle part IEP Predicted GO
CC GO:0044459 plasma membrane part IEP Predicted GO
CC GO:0044464 cell part IEP Predicted GO
BP GO:0051276 chromosome organization IEP Predicted GO
BP GO:0071840 cellular component organization or biogenesis IEP Predicted GO
BP GO:0071941 nitrogen cycle metabolic process IEP Predicted GO
BP GO:0098732 macromolecule deacylation IEP Predicted GO
CC GO:0098796 membrane protein complex IEP Predicted GO
CC GO:0098797 plasma membrane protein complex IEP Predicted GO
CC GO:1902494 catalytic complex IEP Predicted GO
InterPro domains Description Start Stop
IPR029005 LIM-bd/SEUSS 382 635
No external refs found!